Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A23 F60 I1 R1	20	97.1	3292108	99.2%	3265771	138.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,071,497	G→T	noncoding (181/195 nt)	isrC →	small RNA IsrC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,071,497	0	G	T	100.0%	376.6 / NA	106	noncoding (181/195 nt)	isrC	small RNA IsrC
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (57/49); total (57/49)

Only 100 of 113 total aligned reads displayed.

TAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGGGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGCCCGCGCACGGGGTA  >  NC_000913/2071363‑2071632

taataaCCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTAcc                                                                                                                                    >  1:1286201/1‑140 (MQ=255)

  ataaCCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCgg                                                                                                                                  <  1:394253/140‑1 (MQ=255)

      ccTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCttt                                                                                                                              >  1:481174/1‑140 (MQ=255)

      ccTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCttt                                                                                                                              >  2:114342/1‑140 (MQ=255)

          tGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTa                                                                                                                          >  1:32355/1‑140 (MQ=255)

          tGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTa                                                                                                                          >  2:421062/1‑140 (MQ=255)

          tGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTa                                                                                                                          >  1:621118/1‑140 (MQ=255)

          tGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTa                                                                                                                          >  1:673412/1‑140 (MQ=255)

            taaGTAACAAGAACAGATACGGACAGAAAGACATTCGGGGAACACCAGAACCACAATTCAAAACCTCCCGCACCCGGCCCGCCGGCTCTGTAACCCTTTCCCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTAtt                                                                                                                        <  2:898989/138‑1 (MQ=255)

            tCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTAtt                                                                                                                        <  1:114342/140‑1 (MQ=255)

                 aaCATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTAtt                                                                                                                        >  2:7488/1‑135 (MQ=255)

                 aaCATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCAccc                                                                                                                   >  1:623617/1‑140 (MQ=255)

                  aaacgCACAGATGGGCACAGAAAGTCATTAAGGTAACAACAGAACCACAATCAAAAAATTCCCACAGCAGGACAGCCGGCACTGTAGCCCTTAACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCt                                                                                                                  <  2:813940/136‑1 (MQ=255)

                  aCATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCCCAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCt                                                                                                                  <  2:430237/140‑1 (MQ=255)

                  aCATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCt                                                                                                                  <  1:714541/140‑1 (MQ=255)

                      gCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCtttttatt                                                                                                                         <  2:682977/129‑4 (MQ=255)

                      gCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCtttttatt                                                                                                                         >  1:682977/1‑126 (MQ=255)

                      gCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAAt                                                                                                              >  2:176365/1‑140 (MQ=255)

                      gCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAAt                                                                                                              >  1:813940/1‑140 (MQ=255)

                        acaGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCt                                                                                                            >  2:400962/1‑140 (MQ=255)

                          aGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTaa                                                                                                          >  2:191094/1‑140 (MQ=255)

                            aTACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCt                                                                                                                  <  1:1530503/130‑1 (MQ=255)

                            aTACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCt                                                                                                                  >  2:1530503/1‑130 (MQ=255)

                            aTACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAgg                                                                                                        >  2:301666/1‑140 (MQ=255)

                             tACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGa                                                                                                       >  2:1283005/1‑140 (MQ=255)

                              aCGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGaa                                                                                                      >  1:367422/1‑140 (MQ=255)

                              aCGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGaa                                                                                                      >  2:1632492/1‑140 (MQ=255)

                               cGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGaaa                                                                                                     >  1:921666/1‑140 (MQ=255)

                                 tACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAg                                                                                                   <  1:1632492/140‑1 (MQ=255)

                                  aCAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGc                                                                                                  >  2:676292/1‑140 (MQ=255)

                                      aaaGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCtgat                                                                                              >  1:845433/1‑140 (MQ=255)

                                      aaaGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCtgat                                                                                              >  1:258537/1‑140 (MQ=255)

                                      aaaGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCtgat                                                                                              >  1:182407/1‑140 (MQ=255)

                                        aGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCtgatga                                                                                            <  1:301666/140‑1 (MQ=255)

                                        aGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCtgatga                                                                                            >  2:617344/1‑140 (MQ=255)

                                        aGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCtgatga                                                                                            >  1:1093547/1‑140 (MQ=255)

                                           cATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAAc                                                                                         <  2:1106885/140‑1 (MQ=255)

                                           cATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAAc                                                                                         <  2:682797/140‑1 (MQ=255)

                                           cATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAAc                                                                                         <  1:416567/140‑1 (MQ=255)

                                             ttCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCGGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGa                                                                                       <  1:219768/140‑1 (MQ=255)

                                             ttCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGa                                                                                       <  2:860799/140‑1 (MQ=255)

                                              tCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGAc                                                                                      >  2:1424372/1‑140 (MQ=255)

                                              tCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGAc                                                                                      >  1:159678/1‑140 (MQ=255)

                                              tCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGAc                                                                                      <  2:605197/140‑1 (MQ=255)

                                                aGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGGTGAAACGACAt                                                                                    <  1:1613255/140‑1 (MQ=255)

                                                aGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACAt                                                                                    >  2:1409758/1‑140 (MQ=255)

                                                    aacaacAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGa                                                                                >  1:871968/1‑140 (MQ=255)

                                                      caacaGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAAt                                                                              >  2:736240/1‑140 (MQ=255)

                                                        acaGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATAc                                                                            <  2:621118/140‑1 (MQ=255)

                                                           gAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTg                                                                         <  1:1283005/140‑1 (MQ=255)

                                                            aaCCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACg                                                                                        >  2:74141/1‑124 (MQ=255)

                                                            aaCCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACg                                                                                        <  1:74141/124‑1 (MQ=255)

                                                            aaCCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGc                                                                        >  1:1581306/1‑140 (MQ=255)

                                                            aaCCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGc                                                                        >  1:397420/1‑140 (MQ=255)

                                                              ccACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTa                                                                      <  2:159678/140‑1 (MQ=255)

                                                              ccACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTa                                                                      <  1:796592/140‑1 (MQ=255)

                                                                acaATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACa                                                                    >  2:49287/1‑140 (MQ=255)

                                                                acaATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACa                                                                    <  1:676292/140‑1 (MQ=255)

                                                                 caATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAg                                                                   >  1:1460379/1‑140 (MQ=255)

                                                                   aTTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGc                                                                 <  1:736240/140‑1 (MQ=255)

                                                                   aTTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGc                                                                 <  1:421062/140‑1 (MQ=255)

                                                                   aTTCAAAACCCCCCCCAGCCGGACCTCCGGCCCTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGc                                                                 <  2:182407/140‑1 (MQ=255)

                                                                     tCAGAACCTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTg                                                               <  2:1589773/140‑1 (MQ=255)

                                                                       aGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGt                                                             <  2:1460379/140‑1 (MQ=255)

                                                                          accTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATg                                                          <  1:586865/138‑1 (MQ=255)

                                                                            cTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAgg                                                                  >  2:1306315/1‑130 (MQ=255)

                                                                            cTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAgg                                                                  <  1:1306315/130‑1 (MQ=255)

                                                                            cTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGa                                                        <  1:176365/140‑1 (MQ=255)

                                                                              cccACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTa                                                                      <  2:865037/124‑1 (MQ=255)

                                                                              cccACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTa                                                                      >  1:865037/1‑124 (MQ=255)

                                                                                     ccGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGa                                               >  1:510243/1‑140 (MQ=255)

                                                                                       ggACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGAATGGAATCACATGACg                                             >  2:1329963/1‑140 (MQ=255)

                                                                                        gACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACgg                                            >  2:1112658/1‑140 (MQ=255)

                                                                                          ccTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGgc                                          <  1:1424372/140‑1 (MQ=255)

                                                                                               ggCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCttt                                     >  1:102302/1‑140 (MQ=255)

                                                                                                    tGTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTgg                                >  2:1544225/1‑140 (MQ=255)

                                                                                                     gTAACCCTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGt                               >  2:1285103/1‑140 (MQ=255)

                                                                                                          ccTTTACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCt                          <  2:871968/140‑1 (MQ=255)

                                                                                                              tACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGa                      >  1:1210876/1‑140 (MQ=255)

                                                                                                              tACCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGa                      >  2:746309/1‑140 (MQ=255)

                                                                                                               aCCTGCCGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGaa                     <  1:1176758/140‑1 (MQ=255)

                                                                                                                    ccGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGc                >  1:1034363/1‑140 (MQ=255)

                                                                                                                    ccGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGc                >  2:1283149/1‑140 (MQ=255)

                                                                                                                    ccGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGc                >  2:1070064/1‑140 (MQ=255)

                                                                                                                    ccGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGc                >  1:1054180/1‑140 (MQ=255)

                                                                                                                    ccGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGc                >  1:1406235/1‑140 (MQ=255)

                                                                                                                     cGGTATCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGcc               <  1:1094038/140‑1 (MQ=255)

                                                                                                                          tCCACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGCCCgcgc          <  1:1070064/140‑1 (MQ=255)

                                                                                                                           ccACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGCCCGCGCa         <  2:921666/140‑1 (MQ=255)

                                                                                                                           ccACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGCCCGCGCa         <  2:1581306/140‑1 (MQ=255)

                                                                                                                           ccACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGCCCGCGCa         <  1:1544225/140‑1 (MQ=255)

                                                                                                                           ccACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGCCCGCGCa         <  2:1054180/140‑1 (MQ=255)

                                                                                                                            cACGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGCCCGCGCAc        >  1:999656/1‑140 (MQ=255)

                                                                                                                              cGTTTGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGCCCGCGCACgg      >  2:797011/1‑140 (MQ=255)

                                                                                                                                 ttGTGTGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGCCCGCGCACGGGGt   <  1:1112658/140‑1 (MQ=255)

                                                                                                                                  tgtgtgTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGCCCGCGCACGGGGTa  >  1:1378738/1‑140 (MQ=255)

                                                                                                                                  tgtgtgTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGCCCGCGCACGGGGTa  >  1:133547/1‑140 (MQ=255)

                                                                                                                                  tgtgtgTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGCCCGCGCACGGGGTa  >  2:728318/1‑140 (MQ=255)

                                                                                                                                  tgtgtgTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGAGGTTGCCTCCGAACTGGCCCGCGCACg       >  1:1466572/1‑135 (MQ=255)

                                                                                                                                  tgtgtgTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGAGGTTGCCTCCGAACTGGCCCGCGCACg       <  2:1466572/135‑1 (MQ=255)

TAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGGGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATGACGGGCGCTTTCGTGGTTGCCTCCGAACTGGCCCGCGCACGGGGTA  >  NC_000913/2071363‑2071632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A