Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F60 I1 R1 17 124.2 4215036 99.0% 4172885 138.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,846,635 C→A A260S (GCC→TCC)  hycD ← formate hydrogenlyase subunit HycD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,846,6350CA100.0% 358.5 / NA 100A260S (GCC→TCC) hycDformate hydrogenlyase subunit HycD
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (43/57);  total (43/57)

AAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAGCTGTTTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGC  >  NC_000913/2846502‑2846769
                                                                                                                                     |                                                                                                                                        
aaGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCAc                                                                                                                                    <  1:1484059/140‑1 (MQ=255)
   gagaCGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAg                                                                                                                                 >  2:589910/1‑140 (MQ=255)
       cGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAGGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGcc                                                                                                                             >  2:44779/1‑140 (MQ=255)
       cGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGcc                                                                                                                             <  1:1169669/140‑1 (MQ=255)
       cGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGcc                                                                                                                             <  2:2071317/140‑1 (MQ=255)
         aaCGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCcag                                                                                                                           >  2:1740800/1‑140 (MQ=255)
          aCGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCcagc                                                                                                                          >  1:594918/1‑140 (MQ=255)
           cGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCcagca                                                                                                                         >  1:838546/1‑140 (MQ=255)
            gCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCcagcag                                                                                                                        <  1:1041486/140‑1 (MQ=255)
            gCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCcagcag                                                                                                                        <  2:644779/140‑1 (MQ=255)
              tAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCcagcagca                                                                                                                      >  1:1933838/1‑140 (MQ=255)
                aaaaTGCAAAGCCAACCCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCcagcag                                                                                                                        <  2:491686/136‑1 (MQ=255)
                aaaaTGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCcagcag                                                                                                                        >  1:491686/1‑136 (MQ=255)
                aaaaTGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCcagcag                                                                                                                        >  1:730971/1‑136 (MQ=255)
                aaaaTGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCcagcag                                                                                                                        <  2:730971/136‑1 (MQ=255)
                    tGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCAc                                                                                                                <  1:589910/140‑1 (MQ=255)
                    tGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCAc                                                                                                                <  2:2046576/140‑1 (MQ=255)
                     gCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCAcc                                                                                                               <  2:210002/140‑1 (MQ=255)
                     gCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCACGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCAcc                                                                                                               <  2:1539273/140‑1 (MQ=255)
                      cAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACcg                                                                                                              <  2:1706056/140‑1 (MQ=255)
                            cAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑g                                                                                                       <  1:782725/140‑1 (MQ=255)
                            cAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑g                                                                                                       <  2:88259/140‑1 (MQ=255)
                               aCCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑g                                                                                                   <  1:145447/140‑1 (MQ=255)
                                   agcccagGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTGGAA‑GGtt                                                                                                >  2:107633/1‑140 (MQ=255)
                                    gcccagGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTc                                                                                              <  1:2034545/140‑1 (MQ=255)
                                     cccagGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACcggcgg                                                                                                          <  1:709454/129‑1 (MQ=255)
                                     cccagGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACcggcgg                                                                                                          >  2:709454/1‑129 (MQ=255)
                                     cccagGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTcc                                                                                             >  2:374821/1‑140 (MQ=255)
                                         ggTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCAttt                                                                                         >  1:559463/1‑140 (MQ=255)
                                              tGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GGA‑GGGTTCCAttttttcc                                                                                    >  2:2060627/1‑135 (MQ=255)
                                              tGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAAGGGTTTCCTTTTTTcc                                                                                     >  2:979953/1‑140 (MQ=255)
                                              tGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGt                                                                                                 <  1:394966/127‑1 (MQ=255)
                                              tGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGt                                                                                                 >  2:394966/1‑127 (MQ=255)
                                               gcgcGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTcccc                                                                                   <  1:2060627/140‑1 (MQ=255)
                                               gcgcGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTcccc                                                                                   <  2:1518974/140‑1 (MQ=255)
                                               gcgcGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGGTTTCATTTTTcccc                                                                                   >  2:963603/1‑140 (MQ=255)
                                               gcgcGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGGTTCCCTTTTTcccc                                                                                   >  2:1270638/1‑140 (MQ=255)
                                                 gcgGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCAc                                                                                 <  1:1955632/140‑1 (MQ=255)
                                                 gcgGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCAc                                                                                 <  2:173212/140‑1 (MQ=255)
                                                 gacaggTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCAc                                                                                 <  1:1514117/135‑1 (MQ=255)
                                                 caggAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCAc                                                                                 <  1:47334/138‑1 (MQ=255)
                                                 caggAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCAc                                                                                 <  1:2048832/138‑1 (MQ=255)
                                                     aGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGGTTTCCTTTTTTCCCACGGaa                                                                             >  2:1488537/1‑140 (MQ=255)
                                                       tAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAAGGGTTTCCTTTTTCCCCCCCGGata                                                                            >  2:715688/1‑138 (MQ=255)
                                                       tAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGGTTCCCTTTGTCCCCCCCGAATa                                                                           >  1:988730/1‑140 (MQ=255)
                                                            tCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAacac                                                                      <  2:419655/140‑1 (MQ=255)
                                                            tCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAacac                                                                      <  2:1645914/140‑1 (MQ=255)
                                                               aGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGGTTCCCTTTTTCCCCCCCGGAAAAACAcccc                                                                   >  2:1232120/1‑140 (MQ=255)
                                                               aGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGGTTCCATTTTTCCCCCCGGAAAAAACAcccc                                                                   >  2:47334/1‑140 (MQ=255)
                                                               aGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGGTTCCATTTGTCCCCCCGGAATAAACAcccc                                                                   >  1:1586284/1‑140 (MQ=255)
                                                               aGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGC‑GAAGGGTTTCCTTTTGT‑CCCACCGAATAAAAAcccc                                                                   >  2:2048832/1‑140 (MQ=255)
                                                                 aCGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGGTTTCATTTTTCCCCCCGGAATAAAAAcccccc                                                                 >  1:1230024/1‑138 (MQ=255)
                                                                 aCGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGGTTCCATTTTTTCCCCCGCAATAAAAAccagtc                                                                 >  2:1514117/1‑136 (MQ=255)
                                                                 aCGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGG‑GAAGGGTTTCCTTTTTTCCCCCCGAAAAAAAACccccc                                                                  >  2:486059/1‑139 (MQ=255)
                                                                   gCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCcgacg                                                               <  1:1366791/140‑1 (MQ=255)
                                                                   gCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCcgacg                                                               <  1:1270638/140‑1 (MQ=255)
                                                                   gCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCcgacg                                                               <  2:838546/140‑1 (MQ=255)
                                                                    cAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCcgacga                                                              <  1:1426159/140‑1 (MQ=255)
                                                                    cAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGGTTCCATTTTTCCCCACGGAATAAAAACCCccacca                                                              >  1:3765/1‑138 (MQ=255)
                                                                      gACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAAc                                                            >  1:1817209/1‑140 (MQ=255)
                                                                      gACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAAc                                                            <  1:1232120/140‑1 (MQ=255)
                                                                      gACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAAc                                                            <  2:559463/140‑1 (MQ=255)
                                                                           gCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTg                                                       <  1:1252225/140‑1 (MQ=255)
                                                                            ccATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGc                                                      <  1:486059/140‑1 (MQ=255)
                                                                               tGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GGA‑AGTTTTCCTTTGTCCCCCCCGAAGAAACAACCCCGCGAACATCTGCAac                                                   >  2:1793243/1‑140 (MQ=255)
                                                                               tGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAac                                                   <  1:963603/140‑1 (MQ=255)
                                                                               tGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAac                                                   <  1:1488537/140‑1 (MQ=255)
                                                                                   gTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGGTTCCATTTGTCCCCACGGAATAAAAACCCCGACGAACAACTGCAAcaccc                                               >  2:1252225/1‑139 (MQ=255)
                                                                                     tttCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACaccacc                                             >  1:820590/1‑140 (MQ=255)
                                                                                     tttCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGGTTTCATTTTTCCCCCCGGAATAAAAACCCCGACGAACATCTGCAACaccacc                                             >  1:1726478/1‑140 (MQ=255)
                                                                                     tttCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGGTTTCATTTTTCCCCCCCGGATAAACACCCCCACGAACCTCCGCAACaccccc                                             >  1:1489102/1‑140 (MQ=255)
                                                                                     tttCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGGTTCCATTTTTCCCCCCGGAATAAACACCCCCACGAACATCTGCAACaccacc                                             >  2:1748576/1‑140 (MQ=255)
                                                                                     tttCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGG‑GAA‑GGGTTTCATTTTTCCCCCCGGAAAAAAAACCCCCACCAACATCTGCAACaccacc                                             >  1:1498408/1‑140 (MQ=255)
                                                                                       tCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAg                                           <  2:1933838/140‑1 (MQ=255)
                                                                                       tCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAg                                           <  1:44779/140‑1 (MQ=255)
                                                                                       tCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAg                                           <  1:1195179/140‑1 (MQ=255)
                                                                                       tCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAg                                           <  2:820590/140‑1 (MQ=255)
                                                                                          aaCAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGGTTTCATTTTTCCCCCCGGAAAAAACACCCCGACGAACAACTGCAACACCACCAGccg                                        >  2:1110641/1‑138 (MQ=255)
                                                                                          aaCAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGGTTTCATTTGTCCCCCCCGAAAAAAAACCCCGACGAACATCTGCAACACCACCAGccg                                        >  2:798087/1‑138 (MQ=255)
                                                                                              gcgcGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGGTTTCATTTTTCCCCCCCGAAAAAACACCCCCCCGAACAACTGCAACACCCCCAGCCGtttt                                    >  2:1149434/1‑139 (MQ=255)
                                                                                              gcgcGATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGGTTTCATTTGTCCCCCCGGAATAAAAACCCCCACGAACAACTGCAACACCACCAGCCTTTTc                                    >  2:1195179/1‑140 (MQ=255)
                                                                                               cgcgATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAGCTGTTTCa                                   <  1:798087/140‑1 (MQ=255)
                                                                                                gcgATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAGCTGTTTCAg                                  <  1:1740800/140‑1 (MQ=255)
                                                                                                gcgATAACCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAGCTGTTTCAg                                  <  2:1926735/140‑1 (MQ=255)
                                                                                                     aaCCAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAGCTGTTTCAGGCTGa                             <  2:2093492/140‑1 (MQ=255)
                                                                                                       ccAGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAGCTGTTTCAGGCTGATa                           <  1:5373/140‑1 (MQ=255)
                                                                                                         aGGACGCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCAGCAACACCACCAGCTGTTTCAGGCTGATAcc                         <  2:1817209/140‑1 (MQ=255)
                                                                                                              gCCGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGA‑GTA‑GGATTCCATTTGTCCCCCCGGAAATAATACCCCCACGGACATCTTCAACCACCCCAACGGTTTTATGCTGATAaccccct                    >  2:400632/1‑137 (MQ=255)
                                                                                                                cGACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GGA‑GGTTTTCATTTTTCCCCCCCGAATAAAAACCCCCACGAACAACTGCAACACCACCCGCTGTTTCAGGCTGATACCCCACTTc                  >  2:323850/1‑140 (MQ=255)
                                                                                                                 gACCACCAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCCCCGAATAAACACCCCCACGAACAACTGCAACACCACCAGCCGGTTCCGGCTGATACCCCCTTTCa                 >  2:557886/1‑140 (MQ=255)
                                                                                                                  accaccAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAGCTGTTTCAGGCTGATACCCCATTTCAt                <  1:1110641/140‑1 (MQ=255)
                                                                                                                  accaccAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAGCTGTTTCAGGCTGATACCCCATTTCAt                <  2:28319/140‑1 (MQ=255)
                                                                                                                  accaccAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAGCTGTTTCAGGCTGATACCCCATTTCAt                <  1:400632/140‑1 (MQ=255)
                                                                                                                  accaccAGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAGCTGTTTCAGGCTGATACCCCATTTCAt                <  1:323850/140‑1 (MQ=255)
                                                                                                                     cccaGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAGCTGTTTCAGGCTGATACCCCATTTCATGAc             <  2:1041999/139‑1 (MQ=255)
                                                                                                                        aGTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAGCTGTTTCAGGCTGATACCCCATTTCATGACGcc          <  1:1226677/140‑1 (MQ=255)
                                                                                                                         gTTTTACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAGCTGTTTCAGGCTGATACCCCATTTCATGACGCCa         <  1:1748576/140‑1 (MQ=255)
                                                                                                                            ttACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAGCTGTTTCAGGCTGATACCCCATTTCATGACGCCAAAg      <  1:557886/140‑1 (MQ=255)
                                                                                                                             tACGATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAGCTGTTTCAGGCTGATACCCCATTTCATGACGCCAAAgc     <  1:1149434/140‑1 (MQ=255)
                                                                                                                                gATGGAAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAGCTGTTTCAGGCTGATACCCCATTTCATGACGCCAAAgccgc  <  1:1456255/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                        
AAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGT‑GAA‑GGTTTCCATTTGTCCCCACGGAATAAACACCCCGACGAACATCTGCAACACCACCAGCTGTTTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGC  >  NC_000913/2846502‑2846769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A