Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F60 I1 R1	24	115.9	3905994	99.1%	3870840	138.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,874,997	A→G	R141R (CGT→CGC)	cysN ←	sulfate adenylyltransferase subunit 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,874,997	0	A	G	100.0%	431.7 / NA	110	R141R (CGT→CGC)	cysN	sulfate adenylyltransferase subunit 1
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (54/56); total (54/56)

Only 100 of 110 total aligned reads displayed.

CTTCACGAATACGGGTGAACGTCTCTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTACGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGCCAC  >  NC_000913/2874864‑2875131

cTTCACGAATACGGGTGAACGTCTCTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCa                                                                                                                                  >  1:732936/1‑140 (MQ=255)

cTTCACGAATACGGGTGAACGTCTCTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCa                                                                                                                                  >  2:477266/1‑140 (MQ=255)

 ttCACGAATACGGGTGAACGTCTCTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCAt                                                                                                                                 <  2:732936/140‑1 (MQ=255)

 ttCACGAATACGGGTGAACGTCTCTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCAt                                                                                                                                 <  1:1733126/140‑1 (MQ=255)

 ttCACGAATACGGGTGAACGTCTCTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCAt                                                                                                                                 <  1:869459/140‑1 (MQ=255)

   cACGAATACGGGTGAACGTCTCTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCg                                                                                                                               >  1:457626/1‑140 (MQ=255)

   cACGAATACGGGTGAACGTCTCTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCg                                                                                                                               >  2:1459975/1‑140 (MQ=255)

           cGGGTGAACGTCTCTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCg                                                                                                                               >  2:839535/1‑132 (MQ=255)

           cGGGTGAACGTCTCTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCg                                                                                                                               <  1:839535/132‑1 (MQ=255)

             ggTGAACGTCTCTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCg                                                                                                                               <  1:1008444/130‑1 (MQ=255)

             ggTGAACGTCTCTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCg                                                                                                                               >  2:1008444/1‑130 (MQ=255)

              gTGAACGTCTCTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGAt                                                                                                                    <  1:1444794/140‑1 (MQ=255)

                 aaCGTCTCTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGc                                                                                                                 <  2:173868/140‑1 (MQ=255)

                 aaCGTCTCTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGc                                                                                                                 >  1:623254/1‑140 (MQ=255)

                  aCGTCTCTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGcc                                                                                                                <  2:1823559/140‑1 (MQ=255)

                    gTCTCTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAg                                                                                                              >  1:1818257/1‑140 (MQ=255)

                     tctcTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGt                                                                                                             <  2:1495142/140‑1 (MQ=255)

                      ctctTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGtt                                                                                                            >  2:69525/1‑140 (MQ=255)

                      ctctTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGtt                                                                                                            >  2:54811/1‑140 (MQ=255)

                        ctTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTca                                                                                                          >  2:1832232/1‑140 (MQ=255)

                            aCTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTcac                                                                                                         >  2:189437/1‑137 (MQ=255)

                            aCTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTcac                                                                                                         <  1:189437/137‑1 (MQ=255)

                                tAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTcaca                                                                                                        <  2:467563/134‑1 (MQ=255)

                                tAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTcaca                                                                                                        >  1:467563/1‑134 (MQ=255)

                                tAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGa                                                                                                  >  1:1415810/1‑140 (MQ=255)

                                  aTCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATg                                                                                                <  2:1113169/140‑1 (MQ=255)

                                   tCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATgc                                                                                               >  2:304717/1‑140 (MQ=255)

                                    ccaccaGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATgcg                                                                                              <  1:54811/140‑1 (MQ=255)

                                     caccaGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATgcgc                                                                                             >  1:1308854/1‑140 (MQ=255)

                                        caGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGt                                                                                                     >  1:854092/1‑129 (MQ=255)

                                        caGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGt                                                                                                     <  2:854092/129‑1 (MQ=255)

                                        caGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATgcg                                                                                              >  2:1427216/1‑136 (MQ=255)

                                        caGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATgcg                                                                                              <  1:1427216/136‑1 (MQ=255)

                                        caGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATg                                                                                                <  1:1276410/134‑1 (MQ=255)

                                        caGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATg                                                                                                >  2:1276410/1‑134 (MQ=255)

                                        caGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAg                                                                                          <  2:141173/140‑1 (MQ=255)

                                          gATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGcc                                                                                            <  2:822095/136‑1 (MQ=255)

                                          gATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGcc                                                                                            >  1:822095/1‑136 (MQ=255)

                                          gATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTc                                                                                        >  2:1441637/1‑140 (MQ=255)

                                          gATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTc                                                                                        >  2:428141/1‑140 (MQ=255)

                                            tcaaTTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGc                                                                                      >  1:1337159/4‑140 (MQ=255)

                                             ccATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGt                                                                                         <  2:179593/136‑1 (MQ=255)

                                             ccATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGt                                                                                         >  1:179593/1‑136 (MQ=255)

                                              cATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCa                                                                                    <  1:428141/140‑1 (MQ=255)

                                                 tttGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCatat                                                                                 <  1:304717/140‑1 (MQ=255)

                                                 tttGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCatat                                                                                 <  2:327445/140‑1 (MQ=255)

                                                  ttgttgATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTc                                                                                        >  2:1380978/1‑132 (MQ=255)

                                                  ttgttgATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATAtt                                                                                >  1:1583728/1‑140 (MQ=255)

                                                   tgttgATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTg                                                                               <  2:1308854/140‑1 (MQ=255)

                                                     ttgATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCg                                                                             >  1:436763/1‑140 (MQ=255)

                                                     ttgATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCg                                                                             >  2:1262125/1‑140 (MQ=255)

                                                      tgATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCgg                                                                            <  1:1818116/140‑1 (MQ=255)

                                                        aTCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGgt                                                                          >  1:1377515/1‑140 (MQ=255)

                                                          cGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGgtgt                                                                        >  1:1662673/1‑140 (MQ=255)

                                                           gCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTa                                                                       <  2:457626/140‑1 (MQ=255)

                                                            ccACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTAc                                                                      <  1:1832232/140‑1 (MQ=255)

                                                             cACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACt                                                                     >  2:1462654/1‑140 (MQ=255)

                                                                 aCCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTc                                                                 <  1:1459975/140‑1 (MQ=255)

                                                                 aCCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTc                                                                 <  1:136182/140‑1 (MQ=255)

                                                                 aCCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTc                                                                 <  2:1662673/140‑1 (MQ=255)

                                                                 aCCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTc                                                                 <  2:1583728/140‑1 (MQ=255)

                                                                 aCCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTc                                                                 <  1:1462654/140‑1 (MQ=255)

                                                                     gATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGc                                                             >  2:1253259/1‑140 (MQ=255)

                                                                           tGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTggg                                                       <  2:1415810/140‑1 (MQ=255)

                                                                                 ccAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTc                                                                 <  1:1474908/124‑1 (MQ=255)

                                                                                 ccAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTc                                                                 >  2:1474908/1‑124 (MQ=255)

                                                                                  cAACAGTGTGGAGATAAAACTGTGACGGCGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCgg                                                <  1:143329/140‑1 (MQ=255)

                                                                                   aaCAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTc                                                                 <  2:418609/122‑1 (MQ=255)

                                                                                   aaCAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTc                                                                 >  1:418609/1‑122 (MQ=255)

                                                                                   aaCAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGc                                               >  2:1177430/1‑140 (MQ=255)

                                                                                   aaCAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGc                                               >  2:180719/1‑140 (MQ=255)

                                                                                    aCAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCg                                              <  2:436763/140‑1 (MQ=255)

                                                                                     cAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGa                                             >  2:715252/1‑140 (MQ=255)

                                                                                       gtgtGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGata                                           >  2:1241941/1‑140 (MQ=255)

                                                                                        tgtgGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGataa                                          >  1:1314702/1‑140 (MQ=255)

                                                                                          tgGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGataata                                        >  1:1533016/1‑140 (MQ=255)

                                                                                                tAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTa                                  <  2:1314702/140‑1 (MQ=255)

                                                                                                  aaaCTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACg                                <  2:1818257/140‑1 (MQ=255)

                                                                                                    aCTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCt                              >  2:429495/1‑140 (MQ=255)

                                                                                                     cTGTGACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCtt                             <  2:1486205/140‑1 (MQ=255)

                                                                                                      tgtgACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTtc                            >  1:501070/1‑140 (MQ=255)

                                                                                                        tgACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTtctc                          <  1:961443/140‑1 (MQ=255)

                                                                                                        tgACGACGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTtctc                          <  2:623254/140‑1 (MQ=255)

                                                                                                         gacgacGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCtt                             <  1:282274/136‑1 (MQ=255)

                                                                                                         gacgacGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCg                         >  1:1936150/1‑140 (MQ=255)

                                                                                                         gacgacGGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCg                         >  2:1141750/1‑140 (MQ=255)

                                                                                                          acgacgGGTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCgg                        >  2:691534/1‑140 (MQ=255)

                                                                                                                ggTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAgaga                  >  1:761729/1‑140 (MQ=255)

                                                                                                                 gTTTGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGaa                 <  2:761729/140‑1 (MQ=255)

                                                                                                                  tttGATCGAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGaaa                <  1:69525/140‑1 (MQ=255)

                                                                                                                         gAGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGt         >  1:1232450/1‑140 (MQ=255)

                                                                                                                          aGCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTa        >  1:1073643/1‑140 (MQ=255)

                                                                                                                           gCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAg       >  1:1799285/1‑140 (MQ=255)

                                                                                                                           gCACGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAg       >  1:1742953/1‑140 (MQ=255)

                                                                                                                             aCGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGc     <  2:65093/140‑1 (MQ=255)

                                                                                                                             aCGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGc     <  1:1441637/140‑1 (MQ=255)

                                                                                                                             aCGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGc     <  2:1742953/140‑1 (MQ=255)

                                                                                                                             aCGCCTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGc     <  1:1177430/140‑1 (MQ=255)

                                                                                                                                ccTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGCCAc  <  1:691534/140‑1 (MQ=255)

                                                                                                                                ccTTTGCGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGCCAc  <  2:1337159/140‑1 (MQ=255)

CTTCACGAATACGGGTGAACGTCTCTTCACTGTAATCCACCAGATCCATTTTGTTGATCGCCACGACCAGATGTTTGATCCCCAACAGTGTGGAGATAAAACTGTGACGACGGGTTTGATCGAGCACGCCTTTACGGGCATCGATCAGTAAGATCGCCAGTTCACATGTCGATGCGCCAGTCGCCATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGCCAC  >  NC_000913/2874864‑2875131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A