Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A25 F60 I1 R1 22 70.1 2377468 99.1% 2356070 137.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,554,618 C→G A189P (GCG→CCG)  eutR ← putative AraC‑type transcriptional regulator EutR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,554,6180CG100.0% 286.7 / NA 74A189P (GCG→CCG) eutRputative AraC‑type transcriptional regulator EutR
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (31/43);  total (31/43)

GATGCTTTCCGCCGTCACCATTGGTTGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGCCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACATATGTAATACCCGATCCGGGTTATGCAAAAAGTTAGCCTGCCGGGTGATGAC  >  NC_000913/2554484‑2554741
                                                                                                                                      |                                                                                                                           
gATGCTTTCCGCCGTCACCATTGGTTGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGtt                                                                                                                        >  1:601752/1‑140 (MQ=255)
 aTGCTTTCCGCCGTCACCATTGGTTGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTg                                                                                                                       >  1:835175/1‑140 (MQ=255)
 aTGCTTTCCGCCGTCACCATTGGTTGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTg                                                                                                                       >  2:624105/1‑140 (MQ=255)
 aTGCTTTCCGCCGTCACCATTGGTTGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTg                                                                                                                       >  1:535337/1‑140 (MQ=255)
 aTGCTTTCCGCCGTCACCATTGGTTGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTg                                                                                                                       >  2:896202/1‑140 (MQ=255)
  tGCTTTCCGCCGTCACCATTGGTTGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTgg                                                                                                                      >  2:1045129/1‑140 (MQ=255)
   gCTTTCCGCCGTCACCATTGGTTGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGa                                                                                                                     <  2:535337/140‑1 (MQ=255)
   gCTTTCCGCCGTCACCATTGGTTGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGa                                                                                                                     <  1:106364/140‑1 (MQ=255)
     tttCCGCCGTCACCATTGGTTGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACa                                                                                                                   <  2:581213/140‑1 (MQ=255)
      ttCCGCCGTCACCATTGGTTGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACaa                                                                                                                  >  2:1018632/1‑140 (MQ=255)
       tCCGCCGTCACCATTGGTTGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACaaa                                                                                                                 >  2:288543/1‑140 (MQ=255)
                  cATTGGTTGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAgcg                                                                                                      <  2:271730/140‑1 (MQ=255)
                  cATTGGTTGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAgcg                                                                                                      <  2:850658/140‑1 (MQ=255)
                  cATTGGTTGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAgcg                                                                                                      <  1:1045129/140‑1 (MQ=255)
                       gTTGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCt                                                                                                 <  1:1041026/140‑1 (MQ=255)
                        ttGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAgcg                                                                                                      >  2:1149087/1‑134 (MQ=255)
                        ttGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAgcg                                                                                                      <  1:1149087/134‑1 (MQ=255)
                            gcTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAgcgc                                                                                                     >  1:856216/1‑131 (MQ=255)
                            gcTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAgcgc                                                                                                     <  2:856216/131‑1 (MQ=255)
                            gcTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTAtg                                                                                            >  1:1069375/1‑140 (MQ=255)
                            gcTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTAtg                                                                                            <  1:964370/140‑1 (MQ=255)
                             cttcttCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTAtgc                                                                                           <  1:1181673/140‑1 (MQ=255)
                             cttcttCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTAtgc                                                                                           <  1:1018632/140‑1 (MQ=255)
                                cttcCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTAtgctgc                                                                                        >  2:1100786/1‑140 (MQ=255)
                                 ttcCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATgctgct                                                                                       <  1:551197/140‑1 (MQ=255)
                                  tcCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGctc                                                                                      <  1:164079/140‑1 (MQ=255)
                                          ggCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACtt                                                                              >  2:434160/1‑140 (MQ=255)
                                          ggCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACtt                                                                              >  2:1145997/1‑140 (MQ=255)
                                          ggCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACtt                                                                              >  1:1047439/1‑140 (MQ=255)
                                           gCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTc                                                                             >  2:433785/1‑140 (MQ=255)
                                            cccccATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTcc                                                                            >  2:917130/1‑140 (MQ=255)
                                                 aTCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAgcgc                                                                       >  2:345761/1‑140 (MQ=255)
                                                 aTCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAgcgc                                                                       >  2:928976/1‑140 (MQ=255)
                                                   cGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCg                                                                     <  1:917130/140‑1 (MQ=255)
                                                      cATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACt                                                                  <  2:601752/140‑1 (MQ=255)
                                                        ttAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTc                                                                             >  1:819903/1‑127 (MQ=255)
                                                        ttAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTc                                                                             <  2:819903/127‑1 (MQ=255)
                                                          aGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGtt                                                              >  2:296885/1‑140 (MQ=255)
                                                           gCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTa                                                             <  1:629225/140‑1 (MQ=255)
                                                            cAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTAc                                                            <  1:1100786/140‑1 (MQ=255)
                                                            cAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTAc                                                            <  1:395477/140‑1 (MQ=255)
                                                             aaaTTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACg                                                           <  1:515485/140‑1 (MQ=255)
                                                             aaaTTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACg                                                           <  2:829118/140‑1 (MQ=255)
                                                             aaaTTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACg                                                           <  1:561425/140‑1 (MQ=255)
                                                             aaaTTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACg                                                           <  1:896202/140‑1 (MQ=255)
                                                              aaTTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGc                                                          <  2:1069375/140‑1 (MQ=255)
                                                              aaTTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGc                                                          <  1:624105/140‑1 (MQ=255)
                                                              aaTTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGc                                                          <  1:434160/140‑1 (MQ=255)
                                                              aaTTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGc                                                          <  2:938356/140‑1 (MQ=255)
                                                               aTTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCa                                                         <  1:288543/140‑1 (MQ=255)
                                                                ttATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGTCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCg                                                                     >  1:256517/1‑127 (MQ=255)
                                                                ttATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGTCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCg                                                                     <  2:256517/127‑1 (MQ=255)
                                                                     ccccAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGCCTGGTTACGCAACatat                                                   >  1:445742/1‑140 (MQ=255)
                                                                     ccccAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACatat                                                   >  2:152086/1‑140 (MQ=255)
                                                                        cAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACa                                                      <  2:372147/134‑1 (MQ=255)
                                                                        cAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACa                                                      >  1:372147/1‑134 (MQ=255)
                                                                         aGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACat                                                     >  1:37087/1‑134 (MQ=255)
                                                                         aGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACat                                                     <  2:37087/134‑1 (MQ=255)
                                                                            aCTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACATATGTAATAc                                            <  2:848647/140‑1 (MQ=255)
                                                                            aCTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACATATGTAATAc                                            <  1:88952/140‑1 (MQ=255)
                                                                             cTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACATATGTAATAcc                                           >  1:543715/1‑140 (MQ=255)
                                                                                ttCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGc                                                          >  2:196092/1‑122 (MQ=255)
                                                                                ttCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGc                                                          <  1:196092/122‑1 (MQ=255)
                                                                                 tCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACATATGTAATACCCGAt                                       <  1:433785/140‑1 (MQ=255)
                                                                                       tGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACATATGTAATACCCGATCCGGGt                                 <  2:1047439/140‑1 (MQ=255)
                                                                                           ggCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACATATGTAATACCCGATCCGGGTTATg                             <  1:296885/140‑1 (MQ=255)
                                                                                                 tGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACATATGTAATACCCGATCCGGGTTATGCaaaaa                       >  1:267297/1‑140 (MQ=255)
                                                                                                      aTTTTCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACATATGTAATACCCGATCCGGGTTATGCAAAAAGTTAg                  >  2:867018/1‑140 (MQ=255)
                                                                                                       ttttCCGGATTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACATATGTAATACCCGATCCGGGTTATGCAAAAAGTTAGc                 <  1:345761/140‑1 (MQ=255)
                                                                                                               aTTCTCGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACATATGTAATACCCGATCCGGGTTATGCAAAAAGTTAGCCTGCCggg         <  2:267297/140‑1 (MQ=255)
                                                                                                                   tcGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACATATGTAATACCCGATCCGGGTTATGCAAAAAGTTAGCCTGCCGGGtgat     <  1:867018/140‑1 (MQ=255)
                                                                                                                    cGCAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACATATGTAATACCCGATCCGGGTTATGCAAAAAGTTAGCCTGCCGGGtgatg    >  2:43480/1‑140 (MQ=255)
                                                                                                                      cAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACATATGTAATACCCGATCCGGGTTATGCAAAAAGTTAGCCTGCCGGGTGATGAc  <  1:43480/140‑1 (MQ=255)
                                                                                                                      cAAAACGTCGCCAGCGGCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACATATGTAATACCCGATCCGGGTTATGCAAAAAGTTAGCCTGCCGGGTGATGAc  <  2:835175/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                           
GATGCTTTCCGCCGTCACCATTGGTTGCGCTTCTTCCAGCATGGCCCCCATCGCCATTAGCAAATTATCCCCCAGCACTTTTCGCACTGCAGGCTGATGGAGATTTTCCGGATTCTCGCAAAACGTCGCCAGCGCCTGTTGGACAAAGCCCCACAGCGCGGCTTTATGCTGCTCTTTCACTTCCAGCGCCGACTGGTTACGCAACATATGTAATACCCGATCCGGGTTATGCAAAAAGTTAGCCTGCCGGGTGATGAC  >  NC_000913/2554484‑2554741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A