Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A34 F60 I1 R1	18	143.7	4900696	99.1%	4856589	137.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,354,789	G→C	G22A (GGC→GCC)	gltB →	glutamate synthase subunit GltB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,354,789	0	G	C	100.0%	564.4 / NA	142	G22A (GGC→GCC)	gltB	glutamate synthase subunit GltB
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (73/69); total (73/69)

Only 100 of 143 total aligned reads displayed.

CGCTCTTTCTGTGCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGGCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCTGTTACAAAAACCGGATCGCTTTTTTCG  >  NC_000913/3354655‑3354924

cGCTCTTTCTGTGCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAAc                                                                                                                                    <  2:863026/140‑1 (MQ=255)

cGCTCTTTCTGTGCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAAc                                                                                                                                    <  2:830612/140‑1 (MQ=255)

cGCTCTTTCTGTGCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAAc                                                                                                                                    <  2:1268248/140‑1 (MQ=255)

 gCTCTTTCTGTGCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAAcc                                                                                                                                   <  2:306670/140‑1 (MQ=255)

  ctctTTCTGTGCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCt                                                                                                                                  <  2:2161944/140‑1 (MQ=255)

  ctctTTCTGTGCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCt                                                                                                                                  <  2:1560461/140‑1 (MQ=255)

    ctTTCTGTGCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAg                                                                                                                                <  2:866633/140‑1 (MQ=255)

      ttCTGTGCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGcc                                                                                                                              <  1:258047/140‑1 (MQ=255)

       tCTGTGCCCGTGCGCAGGGGTTCGGAAGGGGGGTTCCCGCAGAGCGTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCca                                                                                                                             <  2:247895/140‑1 (MQ=255)

       tCTGTGCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCca                                                                                                                             <  1:442825/140‑1 (MQ=255)

       tCTGTGCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCca                                                                                                                             >  1:1619464/1‑140 (MQ=255)

         tgtgCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCcaca                                                                                                                           <  1:2167425/140‑1 (MQ=255)

           tgCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCt                                                                                                                                  <  2:238741/131‑1 (MQ=255)

           tgCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAg                                                                                                                                >  1:1518750/1‑133 (MQ=255)

           tgCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAg                                                                                                                         >  1:1201406/1‑140 (MQ=255)

           tgCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAg                                                                                                                         >  2:2090426/1‑140 (MQ=255)

             cccGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGc                                                                                                                               <  1:2393214/132‑1 (MQ=255)

             cccGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCcaca                                                                                                                           >  1:782315/1‑136 (MQ=255)

              ccGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTa                                                                                                                      <  2:800212/140‑1 (MQ=255)

               cGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCcaca                                                                                                                           <  2:2202039/134‑1 (MQ=255)

               cGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCcaca                                                                                                                           >  1:2202039/1‑134 (MQ=255)

                gTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGt                                                                                                                    <  2:2440424/140‑1 (MQ=255)

                gTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGt                                                                                                                    <  2:680492/140‑1 (MQ=255)

                gTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGt                                                                                                                    <  1:1358524/140‑1 (MQ=255)

                gTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGt                                                                                                                    <  1:1063085/140‑1 (MQ=255)

                 tGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAAc                                                                                                                                    <  1:41876/123‑1 (MQ=255)

                 tGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAg                                                                                                                                <  1:1038477/127‑1 (MQ=255)

                 tGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAg                                                                                                                                >  2:1038477/1‑127 (MQ=255)

                 tGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTT‑ACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGc                                                                                                                  >  2:1542618/1‑140 (MQ=255)

                   cgcAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCg                                                                                                                 <  2:1077395/140‑1 (MQ=255)

                     cAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTa                                                                                                               <  1:2355086/140‑1 (MQ=255)

                         ggTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGc                                                                                                           <  2:2290393/140‑1 (MQ=255)

                           ttCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCaa                                                                                                         >  1:1059780/1‑140 (MQ=255)

                           ttCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCaa                                                                                                         >  2:741877/1‑140 (MQ=255)

                           ttCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCaa                                                                                                         <  2:1779821/140‑1 (MQ=255)

                              ggAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATac                                                                                                      <  1:741877/140‑1 (MQ=255)

                                  gTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGc                                                                                                  >  1:1795441/1‑140 (MQ=255)

                                     gggTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTTCTGCAATACACGCACt                                                                                               <  1:149065/140‑1 (MQ=255)

                                     gggTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTg                                                                                                            >  2:2089692/1‑127 (MQ=255)

                                     gggTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTg                                                                                                            <  1:2089692/127‑1 (MQ=255)

                                     gggTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACt                                                                                               >  2:149065/1‑140 (MQ=255)

                                          cccGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGccc                                                                                          <  2:1795441/140‑1 (MQ=255)

                                          cccGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGccc                                                                                          >  2:685075/1‑140 (MQ=255)

                                          cccGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGccc                                                                                          >  2:2427109/1‑140 (MQ=255)

                                          cccGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGccc                                                                                          <  2:2176855/140‑1 (MQ=255)

                                          cccGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGccc                                                                                          <  1:685075/140‑1 (MQ=255)

                                          cccGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGccc                                                                                          <  1:2427109/140‑1 (MQ=255)

                                                gagCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATgc                                                                                    >  1:626539/1‑140 (MQ=255)

                                                  gCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATgcag                                                                                  >  1:193874/1‑140 (MQ=255)

                                                     tGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCAc                                                                               >  1:985091/1‑140 (MQ=255)

                                                     tGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCAc                                                                               >  2:1895788/1‑140 (MQ=255)

                                                            ggTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGgcg                                                                        <  1:234074/140‑1 (MQ=255)

                                                             gTTCACGATATGTTGTACTATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGgcgc                                                                       >  2:414560/1‑140 (MQ=255)

                                                             gTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGgcgc                                                                       >  2:2153815/1‑140 (MQ=255)

                                                             gTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGgcg                                                                        >  2:463884/1‑139 (MQ=255)

                                                             gTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGgcg                                                                        <  1:463884/139‑1 (MQ=255)

                                                                 aCGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGAtt                                                                   >  2:2331534/1‑140 (MQ=255)

                                                                       tgttgtACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGcc                                                             >  1:1970350/1‑140 (MQ=255)

                                                                             actaTAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGt                                                       <  1:414560/137‑1 (MQ=255)

                                                                             aCGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGt                                                       <  1:2153815/140‑1 (MQ=255)

                                                                                   aaTCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGTCACAAGGTAGTGCGTACTACAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGcc                                                             >  1:1852509/1‑128 (MQ=255)

                                                                                   aaTCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGTCACAAGGTAGTGCGTACTACAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGcc                                                             <  2:1852509/128‑1 (MQ=255)

                                                                                   aaTCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAAcc                                                 >  2:1104207/1‑140 (MQ=255)

                                                                                    aTCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCg                                                >  2:1078809/1‑140 (MQ=255)

                                                                                        cTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGa                                            <  2:781773/140‑1 (MQ=255)

                                                                                        cTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGa                                            <  1:1104207/140‑1 (MQ=255)

                                                                                         ttGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGAc                                           >  1:1431533/1‑140 (MQ=255)

                                                                                          tGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACg                                          >  1:1744135/1‑140 (MQ=255)

                                                                                               gggATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGc                                     >  2:1519114/1‑140 (MQ=255)

                                                                                                ggATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCg                                    >  1:1914751/1‑140 (MQ=255)

                                                                                                ggATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCg                                    >  1:1707927/1‑140 (MQ=255)

                                                                                                   tAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCt                                 <  2:416703/140‑1 (MQ=255)

                                                                                                     aCTGTGGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTg                               <  2:163342/140‑1 (MQ=255)

                                                                                                       tgtgGTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCt                             >  1:2351606/1‑140 (MQ=255)

                                                                                                          ggTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCt                             <  2:1547496/137‑1 (MQ=255)

                                                                                                          ggTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCt                             >  1:1547496/1‑137 (MQ=255)

                                                                                                          ggTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCTGtt                          >  2:329336/1‑140 (MQ=255)

                                                                                                           gTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGtt                                       >  1:46475/1‑126 (MQ=255)

                                                                                                           gTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGtt                                       <  2:46475/126‑1 (MQ=255)

                                                                                                           gTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTg                                      <  1:1598862/127‑1 (MQ=255)

                                                                                                           gTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCTGTTa                         >  2:1987275/1‑140 (MQ=255)

                                                                                                           gTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCTGTTa                         >  2:1854617/1‑140 (MQ=255)

                                                                                                           gTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCTGTTa                         >  2:1383564/1‑140 (MQ=255)

                                                                                                           gTTTCGGCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCTGTTa                         >  2:1725866/1‑140 (MQ=255)

                                                                                                              tCGGCCTGATCGACCACATAGAAGCCGACCCTAGCCACAAGGTAGTGCGTACTGCAATACACGCAGTGGCCCGCATGCAGCACCGTGGCGCGATTCCCGCCGATGGCAAAACCGGCGACGGTTGCGGCTTGCTGTTACaa                      >  1:2189815/1‑140 (MQ=255)

                                                                                                                ggCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCt                                 >  1:63066/1‑127 (MQ=255)

                                                                                                                ggCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCt                                 <  2:63066/127‑1 (MQ=255)

                                                                                                                 gCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTg                               <  2:157461/128‑1 (MQ=255)

                                                                                                                 gCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTg                               >  1:157461/1‑128 (MQ=255)

                                                                                                                 gCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCTGTTACaaaaa                   >  1:1863053/1‑140 (MQ=255)

                                                                                                                 gCCTGATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCTGTTACaaaaa                   >  2:1866726/1‑140 (MQ=255)

                                                                                                                     gATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCTGTTACAAAAACCgg               <  2:1619464/140‑1 (MQ=255)

                                                                                                                     gATCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCTGTTACAAAAACCgg               >  1:1853186/1‑140 (MQ=255)

                                                                                                                      aTCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCTGTTACAAAAACCGGa              >  1:276810/1‑140 (MQ=255)

                                                                                                                       tCGCCCACATAGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCTGTTACAAAAACCGGAt             <  2:2344459/140‑1 (MQ=255)

                                                                                                                                tAGAAGCCGAACCTAGCCACAAGGTAGTGTGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCTGTTACAAAAACCGGATCGCtttttt    >  1:2339741/1‑140 (MQ=255)

                                                                                                                                 aGAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCTGTTACAAAAACCGGATCGCt         <  2:1063497/134‑1 (MQ=255)

                                                                                                                                  gAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCTGTTACAAAAACCGGATCGCTTTTTTCg  <  1:2331534/140‑1 (MQ=255)

                                                                                                                                  gAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCTGTTACAAAAACCGGATCGCTTTTTTCg  >  2:2315176/1‑140 (MQ=255)

                                                                                                                                  gAAGCCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCTGTTACAAAAACCGGATCGCTTTTTTCg  <  1:1078809/140‑1 (MQ=255)

CGCTCTTTCTGTGCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCCCACATAGAAGGCGAACCTAGCCACAAGGTAGTGCGTACTGCAATACACGCACTGGCCCGCATGCAGCACCGTGGCGCGATTCTCGCCGATGGTAAAACCGGCGACGGTTGCGGCTTGCTGTTACAAAAACCGGATCGCTTTTTTCG  >  NC_000913/3354655‑3354924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A