Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F60 I1 R1	20	57.0	1936532	99.1%	1919103	138.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,381,992	T→C	V417A (GTC→GCC)	degQ →	periplasmic serine endoprotease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,381,992	0	T	C	100.0%	234.8 / NA	61	V417A (GTC→GCC)	degQ	periplasmic serine endoprotease
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (35/26); total (35/26)

CGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGTCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGATGCGTTAATGTCGTAAACCGGGCATC  >  NC_000913/3381863‑3382128

cgcTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGAt                                                                                                                                >  1:780836/1‑140 (MQ=255)

cgcTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGAt                                                                                                                                >  2:860419/1‑140 (MQ=255)

cgcTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCGGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGAt                                                                                                                                >  1:223809/1‑140 (MQ=255)

     gAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGt                                                                                                                           >  1:273072/1‑140 (MQ=255)

      aaGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTg                                                                                                                          <  1:632633/140‑1 (MQ=255)

           gCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTc                                                                                                                     <  2:14562/140‑1 (MQ=255)

            cAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCg                                                                                                                    >  1:574104/1‑140 (MQ=255)

               cGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGa                                                                                                                                 >  2:433861/1‑124 (MQ=255)

               cGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGa                                                                                                                                 <  1:433861/124‑1 (MQ=255)

                    aGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGa                                                                                                                   >  1:535954/1‑133 (MQ=255)

                    aGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGa                                                                                                                   <  2:535954/133‑1 (MQ=255)

                    aGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGa                                                                                                            >  2:68775/1‑140 (MQ=255)

                    aGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGa                                                                                                            >  2:645788/1‑140 (MQ=255)

                    aGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGa                                                                                                            >  1:397614/1‑140 (MQ=255)

                    aGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAACCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGCGAACTCGATTGTTGa                                                                                                            >  2:677406/1‑140 (MQ=255)

                         tGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGc                                                                                                       >  1:596549/1‑140 (MQ=255)

                              aGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTaaa                                                                                                  >  1:396954/1‑140 (MQ=255)

                                   aaaGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGAGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCt                                                                                             <  1:825828/140‑1 (MQ=255)

                                        tGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTggcgg                                                                                        <  2:397614/140‑1 (MQ=255)

                                          gcggcAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCa                                                                                      >  1:217551/1‑140 (MQ=255)

                                                 aGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCgg                                                                               >  1:520454/1‑140 (MQ=255)

                                                            tCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGcc                                                                    <  1:68775/140‑1 (MQ=255)

                                                             cGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGccc                                                                   <  2:574104/140‑1 (MQ=255)

                                                              gATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAGGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCt                                                                  >  1:611792/1‑140 (MQ=255)

                                                              gATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCt                                                                  >  2:331054/1‑140 (MQ=255)

                                                                tGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCtac                                                                >  2:365059/1‑138 (MQ=255)

                                                                tGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCtac                                                                >  2:959758/1‑138 (MQ=255)

                                                                tGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGc                                                                >  1:342195/1‑140 (MQ=255)

                                                                 gAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCa                                                               <  2:596549/140‑1 (MQ=255)

                                                                   aGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCaaa                                                             <  2:342195/140‑1 (MQ=255)

                                                                      tGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTACAATTTg                                                          <  1:959758/140‑1 (MQ=255)

                                                                      tGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTACAATTTg                                                          <  1:365059/140‑1 (MQ=255)

                                                                        tCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTa                                                        >  1:904698/1‑140 (MQ=255)

                                                                               aaGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCa                                                 >  2:651325/1‑140 (MQ=255)

                                                                               aaGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCa                                                 >  1:453592/1‑140 (MQ=255)

                                                                                 gCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAAt                                               >  2:256470/1‑140 (MQ=255)

                                                                                  cccAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCGAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATg                                              >  1:572454/1‑140 (MQ=255)

                                                                                  cccAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATg                                              >  1:611723/1‑140 (MQ=255)

                                                                                      gctgctCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAg                                          <  2:273072/140‑1 (MQ=255)

                                                                                         gctCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCat                                       >  2:95171/1‑140 (MQ=255)

                                                                                         gctCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCat                                       <  1:651325/140‑1 (MQ=255)

                                                                                            cAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCatcta                                    >  1:489899/1‑140 (MQ=255)

                                                                                            cAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCatcta                                    >  1:899733/1‑140 (MQ=255)

                                                                                            cAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCatcta                                    >  2:669399/1‑140 (MQ=255)

                                                                                            cAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCa                                        <  1:442712/136‑1 (MQ=255)

                                                                                            cAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCa                                        >  2:442712/1‑136 (MQ=255)

                                                                                             aGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCatctat                                   <  2:470568/140‑1 (MQ=255)

                                                                                                    ctTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGaa                                            >  1:715486/1‑124 (MQ=255)

                                                                                                    ctTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGaa                                            <  2:715486/124‑1 (MQ=255)

                                                                                                    ctTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCat                                       <  1:575295/129‑1 (MQ=255)

                                                                                                    ctTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCat                                       >  2:575295/1‑129 (MQ=255)

                                                                                                    ctTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGa                            <  2:520454/140‑1 (MQ=255)

                                                                                                    ctTGCAAAAAGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGa                            <  1:669399/140‑1 (MQ=255)

                                                                                                         aaaaaGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGATGCGt                       >  2:854213/1‑140 (MQ=255)

                                                                                                           aaggACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGATGCGTTa                     <  2:611792/137‑1 (MQ=255)

                                                                                                           aaaGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGATGCGTTa                     <  2:217551/140‑1 (MQ=255)

                                                                                                           aaaGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGATGCGTTa                     <  2:780836/140‑1 (MQ=255)

                                                                                                           aaaGACGATGTGATCATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGATGCGTTa                     <  1:95171/140‑1 (MQ=255)

                                                                                                                         cATTGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGATGCGTTAATGTCGTAAACCgg       >  1:748928/1‑140 (MQ=255)

                                                                                                                            tGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGATGCGTTAATGTCGTAAACCGGGCa    >  1:874319/1‑140 (MQ=255)

                                                                                                                            tGGCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGATGCGTTAATGTCGTAAACCGGGCa    <  2:6583/140‑1 (MQ=255)

                                                                                                                             ggCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGATGCGTTa                     >  2:889923/1‑122 (MQ=255)

                                                                                                                             ggCGCCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGATGCGTTa                     <  1:889923/122‑1 (MQ=255)

                                                                                                                              gcgcCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGATGCGTTAATGTCGTAAACCGGGCATc  <  2:489899/140‑1 (MQ=255)

                                                                                                                              gcgcCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGATGCGTTAATGTCGTAAACCGGGCATc  <  2:899733/140‑1 (MQ=255)

CGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGTCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGATGCGTTAATGTCGTAAACCGGGCATC  >  NC_000913/3381863‑3382128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A