Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F60 I1 R1	20	57.0	1936532	99.1%	1919103	138.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,989,638	A→T	D112V (GAT→GTT)	yqeJ →	protein YqeJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,989,638	0	A	T	100.0%	308.1 / NA	87	D112V (GAT→GTT)	yqeJ	protein YqeJ
Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (40/47); total (40/47)

TTGCGTTGAGTGGAACCTGGCAACAAGGTAACAGAGAAAGTAAATCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGATCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAGCATTGGTAACAGAGCAATAATGCAT  >  NC_000913/2989503‑2989774

ttGCGTTGAGTGGAACCTGGCAACAAGGTAACAGAGAAAGTAAATCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCaa                                                                                                                                      >  1:63120/1‑140 (MQ=255)

 tGCGTTGAGTGGAACCTGGCAACAAGGTAACAGAGAAAGTAAATCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAg                                                                                                                                     <  2:326765/140‑1 (MQ=255)

 tGCGTTGAGTGGAACCTGGCAACAAGGTAACAGAGAAAGTAAATCAATACAGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAg                                                                                                                                     <  1:345540/140‑1 (MQ=255)

   cGTTGAGTGGAACCTGGCAACAAGGTAACAGAGAAAGTAAATCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGtt                                                                                                                                   <  1:584722/140‑1 (MQ=255)

    gTTGAGTGGAACCTGGCAACAAGGTAACAGAGAAAGTAAATCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTtg                                                                                                                                  <  2:63120/140‑1 (MQ=255)

      tGAGTGGAACCTGGCAACAAGGTAACAGAGAAAGTAAATCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTtgat                                                                                                                                <  2:573629/140‑1 (MQ=255)

        aGTGGAACCTGGCAACAAGGTAACAGAGAAAGTAAATCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTtgatga                                                                                                                              >  1:884810/1‑140 (MQ=255)

        aGTGGAACCTGGCAACAAGGTAACAGAGAAAGTAAATCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTtgatga                                                                                                                              >  2:72437/1‑140 (MQ=255)

           ggAACCTGGCAACAAGGTAACAGAGAAAGTAAATCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTtgatgatga                                                                                                                           <  1:328306/140‑1 (MQ=255)

               ccTGGCAACAAGGTAACAGAGAAAGTAAATCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGa                                                                                                                       >  2:838937/1‑140 (MQ=255)

                cTGGCAACAAGGTAACAGAGAAAGTAAATCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGAc                                                                                                                      <  1:314187/140‑1 (MQ=255)

                  ggCAACAAGGTAACAGAGAAAGTAAATCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACtt                                                                                                                    >  2:967556/1‑140 (MQ=255)

                  ggCAACAAGGTAACAGAGAAAGTAAATCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACtt                                                                                                                    >  2:757824/1‑140 (MQ=255)

                   gCAACAAGGTAACAGAGAAAGTAAATCAATACGGCGAAATATAGAATACACATGGATTGAAAACTATGACACATCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTg                                                                                                                   <  2:698209/140‑1 (MQ=255)

                                    aaaGTAAATCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTa                                                                                                          >  1:269233/1‑132 (MQ=255)

                                    aaaGTAAATCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTa                                                                                                          <  2:269233/132‑1 (MQ=255)

                                      aGTAAATCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGAttt                                                                                                >  1:63813/1‑140 (MQ=255)

                                          aaTCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTAt                                                                                            >  1:279616/1‑140 (MQ=255)

                                            tCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGt                                                                                          >  1:90607/1‑140 (MQ=255)

                                                  cGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTcc                                                                                    >  2:893091/1‑140 (MQ=255)

                                                     cGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTAAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGa                                                                                 >  1:769886/1‑140 (MQ=255)

                                                       aaaTATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGaaa                                                                               <  1:757824/140‑1 (MQ=255)

                                                        aaTATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGaaaa                                                                              <  1:967556/140‑1 (MQ=255)

                                                          tatTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGaaaaaa                                                                            >  2:23335/1‑140 (MQ=255)

                                                             tGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTAAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAgtg                                                                         <  2:769886/140‑1 (MQ=255)

                                                               aaTACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTa                                                                       <  2:279616/140‑1 (MQ=255)

                                                               aaTACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTa                                                                       <  1:5808/140‑1 (MQ=255)

                                                               aaTACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTa                                                                       <  1:392999/140‑1 (MQ=255)

                                                               aaTACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTa                                                                       <  2:63813/140‑1 (MQ=255)

                                                               aaTACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTa                                                                       <  2:884810/140‑1 (MQ=255)

                                                                 tACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGTCTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAg                                                                     <  2:114977/140‑1 (MQ=255)

                                                                 tACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAgt                                                                          >  1:569767/1‑135 (MQ=255)

                                                                 tACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAgt                                                                          <  2:569767/135‑1 (MQ=255)

                                                                 tACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAg                                                                     <  2:473789/140‑1 (MQ=255)

                                                                 tACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAg                                                                     <  1:838937/140‑1 (MQ=255)

                                                                 tACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAg                                                                     <  1:115293/140‑1 (MQ=255)

                                                                 tACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAg                                                                     <  1:72437/140‑1 (MQ=255)

                                                                    acaTGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCta                                                                  >  1:260855/1‑140 (MQ=255)

                                                                    acaTGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCta                                                                  >  1:323708/1‑140 (MQ=255)

                                                                      aTGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTa                                                                       >  2:412398/1‑133 (MQ=255)

                                                                      aTGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTa                                                                       <  1:412398/133‑1 (MQ=255)

                                                                      aTGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCtata                                                                >  2:87690/1‑140 (MQ=255)

                                                                       tGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTataa                                                               <  1:23335/140‑1 (MQ=255)

                                                                       tGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTataa                                                               <  2:260855/140‑1 (MQ=255)

                                                                         gATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAgtg                                                                         >  1:167106/1‑128 (MQ=255)

                                                                         gATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAgtg                                                                         <  2:167106/128‑1 (MQ=255)

                                                                           ttGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAAtata                                                           >  1:451813/1‑140 (MQ=255)

                                                                              aaaaCTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTa                                                                       >  1:109810/1‑125 (MQ=255)

                                                                              aaaaCTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTa                                                                       <  2:109810/125‑1 (MQ=255)

                                                                              aaaaCTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCtata                                                                >  1:641854/1‑132 (MQ=255)

                                                                              aaaaCTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCtata                                                                <  2:641854/132‑1 (MQ=255)

                                                                              aaaaCTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTataa                                                               <  1:671513/133‑1 (MQ=255)

                                                                              aaaaCTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTataa                                                               >  2:671513/1‑133 (MQ=255)

                                                                                aaCTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTaaa                                                      >  2:21756/1‑140 (MQ=255)

                                                                                 aCTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAg                                                     <  2:451813/140‑1 (MQ=255)

                                                                                 aCTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAg                                                     <  1:21756/140‑1 (MQ=255)

                                                                                    aTGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAAc                                                                                                             <  2:780277/81‑1 (MQ=255)

                                                                                    aTGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAAc                                                                                                             >  1:780277/1‑81 (MQ=255)

                                                                                    aTGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCaa                                                  >  2:349731/1‑140 (MQ=255)

                                                                                      gACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAgg                                                <  2:104453/140‑1 (MQ=255)

                                                                                           aGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGc                                           >  1:472547/1‑140 (MQ=255)

                                                                                             cccATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCa                                          >  2:499825/1‑139 (MQ=255)

                                                                                             cccATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCa                                          >  2:813035/1‑139 (MQ=255)

                                                                                             cccATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCa                                          <  1:813035/139‑1 (MQ=255)

                                                                                             cccATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCa                                          <  1:499825/139‑1 (MQ=255)

                                                                                             cccATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCAt                                         >  2:387651/1‑140 (MQ=255)

                                                                                                     aCATCAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTAt                                 >  1:544051/1‑140 (MQ=255)

                                                                                                         cAAAGAAAGTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTg                             >  2:72648/1‑140 (MQ=255)

                                                                                                          aaagaaagTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGa                            <  1:387651/140‑1 (MQ=255)

                                                                                                          aaagaaagTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGa                            <  1:87690/140‑1 (MQ=255)

                                                                                                           aagaaagTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTGTAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAg                           >  1:549700/1‑140 (MQ=255)

                                                                                                           aagaaagTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAg                           >  1:726155/1‑140 (MQ=255)

                                                                                                           aagaaagTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAg                           >  2:154129/1‑140 (MQ=255)

                                                                                                            agaaagTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAGc                          <  2:89471/140‑1 (MQ=255)

                                                                                                                 gTTAATAAGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAGCATTgg                     >  2:349600/1‑140 (MQ=255)

                                                                                                                    aataaGTTTGAGATTATGGTTCAAGTTGATGATGATAGACATGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAGCATTGGTaa                  >  2:376977/1‑140 (MQ=255)

                                                                                                                       aaGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAGCATTGGTAACag               <  1:243762/140‑1 (MQ=255)

                                                                                                                       aaGTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAGCATTGGTAACag               <  1:349600/140‑1 (MQ=255)

                                                                                                                         gTTTGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAGCATTGGTAACagag             <  1:154129/140‑1 (MQ=255)

                                                                                                                            tGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAGCATTGGt                    >  2:123030/1‑130 (MQ=255)

                                                                                                                            tGAGATTATGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAGCATTGGt                    <  1:123030/130‑1 (MQ=255)

                                                                                                                                   aTGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAGCATTGGTAACAGAGCAATAATGCa   <  2:726155/140‑1 (MQ=255)

                                                                                                                                   aTGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAGCATTGGTAACAGAGCAATAATGCa   <  2:323708/140‑1 (MQ=255)

                                                                                                                                   aTGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAGCATTGGTAACAGAGCAATAATGCa   <  1:349731/140‑1 (MQ=255)

                                                                                                                                    tGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAGCATTGGTAACAGAGCAATAATGCa   <  2:863845/139‑1 (MQ=255)

                                                                                                                                    tGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAGCATTGGTAACAGAGCAATAATGCa   >  1:863845/1‑139 (MQ=255)

                                                                                                                                    tGGTTCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAGCATTGGTAACAGAGCAATAATGCAt  >  1:944874/1‑140 (MQ=255)

TTGCGTTGAGTGGAACCTGGCAACAAGGTAACAGAGAAAGTAAATCAATACGGCGAAATATTGAATACACATGGATTGAAAACTATGACACAGCCCATTTAACATCAAAGAAAGTTAATAAGTTTGAGATTATGGATCAAGTTGATGATGATAGACTTGCACAACTTATTCCTGATTTTTATGTCTTTCCAGAAAAAAGTGTAAGCTATAATATACTAAAGCAAGGTAAGCATGCTTTTATTTTGAGCATTGGTAACAGAGCAATAATGCAT  >  NC_000913/2989503‑2989774

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A