Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A30 F60 I1 R1	15	49.4	1682684	98.9%	1664174	137.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,274,474	T→C	I99T (ATC→ACC)	yejB →	putative oligopeptide ABC transporter membrane subunit YejB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,274,474	0	T	C	100.0%	253.9 / NA	67	I99T (ATC→ACC)	yejB	putative oligopeptide ABC transporter membrane subunit YejB
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (36/31); total (36/31)

GGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGTTTCCATCACCCTCGGATTGTGGAGCACG  >  NC_000913/2274338‑2274610

ggCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCa                                                                                                                                       <  1:436777/140‑1 (MQ=255)

         ggTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTa                                                                                                                              <  2:100702/140‑1 (MQ=255)

             ttCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTc                                                                                                                          >  2:463460/1‑140 (MQ=255)

               cGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCaa                                                                                                                        >  2:436682/1‑140 (MQ=255)

                gTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCaaa                                                                                                                       >  2:572268/1‑140 (MQ=255)

                 tGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACg                                                                                                                                 >  1:751477/1‑129 (MQ=255)

                 tGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACg                                                                                                                                 <  2:751477/129‑1 (MQ=255)

                 tGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTa                                                                                                                              <  2:450838/132‑1 (MQ=255)

                 tGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTa                                                                                                                              >  1:450838/1‑132 (MQ=255)

                       ccaTGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGctct                                                                                                                <  2:114569/140‑1 (MQ=255)

                           gcgcAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGa                                                                                                            >  1:694855/1‑140 (MQ=255)

                                     gtgtCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGc                                                                                                  >  2:758960/1‑140 (MQ=255)

                                      tgtCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCt                                                                                                 >  1:234805/1‑140 (MQ=255)

                                              atatCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGAtttt                                                                                         <  1:572268/140‑1 (MQ=255)

                                               tatCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTg                                                                                        >  2:621319/1‑140 (MQ=255)

                                               tatCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTg                                                                                        >  2:514401/1‑140 (MQ=255)

                                               tatCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTg                                                                                        >  1:299130/1‑140 (MQ=255)

                                                    gCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGAt                                                                                   >  1:654381/1‑140 (MQ=255)

                                                         aGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCt                                                                              >  1:670506/1‑140 (MQ=255)

                                                           tAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGt                                                                            >  2:120950/1‑140 (MQ=255)

                                                               tACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTc                                                                         <  2:611810/139‑1 (MQ=255)

                                                               tACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTc                                                                         >  1:611810/1‑139 (MQ=255)

                                                                  cGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAg                                                                     >  1:374129/1‑140 (MQ=255)

                                                                   gTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAgc                                                                    <  1:758960/140‑1 (MQ=255)

                                                                   gTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAgc                                                                    >  1:309047/1‑140 (MQ=255)

                                                                   gTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAgc                                                                    >  2:569464/1‑140 (MQ=255)

                                                                   gTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCACTTTGATTTTGGCGATAGCCTGTTTCGCAgc                                                                    >  2:410524/1‑140 (MQ=255)

                                                                     ggCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAgcgc                                                                  >  2:316638/1‑140 (MQ=255)

                                                                     ggCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAgcgc                                                                  >  2:41031/1‑140 (MQ=255)

                                                                     ggCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAgcgc                                                                  >  2:690291/1‑140 (MQ=255)

                                                                       cGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCt                                                                <  2:234805/140‑1 (MQ=255)

                                                                       cGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCt                                                                <  1:120950/140‑1 (MQ=255)

                                                                        ggACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTc                                                               <  1:410524/140‑1 (MQ=255)

                                                                         gACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCg                                                              >  2:18224/1‑140 (MQ=255)

                                                                           cgcgGATTAGATCCAGAAGCGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCggc                                                            >  1:79506/1‑139 (MQ=255)

                                                                            gcgGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTg                                                           <  2:309047/140‑1 (MQ=255)

                                                                                  tAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACg                                                     <  2:670506/140‑1 (MQ=255)

                                                                                   aGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGCCTCCATCCGCTCTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGc                                                    <  2:694855/140‑1 (MQ=255)

                                                                                   aGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGc                                                    <  1:18224/140‑1 (MQ=255)

                                                                                   aGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTCGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGc                                                    <  1:463460/140‑1 (MQ=255)

                                                                                          gAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTaa                                             >  2:525459/1‑140 (MQ=255)

                                                                                          gAAGTGATCGATGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTaa                                             >  2:118389/1‑140 (MQ=255)

                                                                                             gTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGa                                          <  1:41031/140‑1 (MQ=255)

                                                                                             gTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGa                                          <  1:690291/140‑1 (MQ=255)

                                                                                               gATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACa                                        >  1:605238/1‑140 (MQ=255)

                                                                                                aTCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAg                                       >  2:831713/1‑140 (MQ=255)

                                                                                                aTCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAg                                       >  1:732449/1‑140 (MQ=255)

                                                                                                aTCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAg                                       >  1:83878/1‑140 (MQ=255)

                                                                                                     tGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGc                                  >  2:466142/1‑140 (MQ=255)

                                                                                                     tGAGATCACTCATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGc                                  <  1:831713/140‑1 (MQ=255)

                                                                                                         aTCACTCATCGCTGAGGTGTTGATAAGCCGACACACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGTTGCTGACGCTGATTAAAGACAGTCTGCCGGt                              <  2:299130/140‑1 (MQ=255)

                                                                                                               cATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGTTTCCAt                        <  1:316638/140‑1 (MQ=255)

                                                                                                               cATCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGTTTCCAt                        <  2:374129/140‑1 (MQ=255)

                                                                                                                 tCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGttt                            >  2:57776/1‑134 (MQ=255)

                                                                                                                 tCGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGttt                            <  1:57776/134‑1 (MQ=255)

                                                                                                                  cGCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGTTTCCATCAc                     >  1:52964/1‑140 (MQ=255)

                                                                                                                   gCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTc                                     >  1:418146/1‑123 (MQ=255)

                                                                                                                   gCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTc                                     <  2:418146/123‑1 (MQ=255)

                                                                                                                   gCTACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGTTTCCATCAcc                    >  1:156608/1‑140 (MQ=255)

                                                                                                                     tACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGTTTCCATCACCCt                  >  1:519643/1‑140 (MQ=255)

                                                                                                                     tACGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGTTTCCATCACCCt                  <  2:732449/140‑1 (MQ=255)

                                                                                                                       cGGTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGTTTCCATCACCCTCg                <  2:83878/140‑1 (MQ=255)

                                                                                                                         gTTTTGATAAGCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGTTTCCATCACCCTCGGa              <  1:436682/140‑1 (MQ=255)

                                                                                                                                   gCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGTTTCCATCACCCTCGGATTGTGGAGCa    <  1:621319/140‑1 (MQ=255)

                                                                                                                                   gCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGTTTCCATCACCCTCGGATTGTGGAGCa    <  1:514401/140‑1 (MQ=255)

                                                                                                                                   gCCGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGTTTCCATCACCCTCGGATTGTGGAGCa    <  1:466142/140‑1 (MQ=255)

                                                                                                                                     cGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGTTTCCATCACCCTCGGATTGTGGAGCACg  <  2:654381/140‑1 (MQ=255)

                                                                                                                                     cGACCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGTTTCCATCACCCTCGGATTGTGGAGCACg  <  1:525459/140‑1 (MQ=255)

GGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGTTTCCATCACCCTCGGATTGTGGAGCACG  >  NC_000913/2274338‑2274610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A