Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A31 F60 I1 R1
|
17 |
65.4 |
2242240 |
99.1% |
2222059 |
138.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
2,271,955 |
Δ980 bp |
|
[pdeN]–[yejA] |
[pdeN], [yejA] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
2271955 |
2272934 |
980 |
72 [0] |
[2] 73 |
[pdeN]–[yejA] |
[pdeN],[yejA] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 2271954 | 0 (0.000) | 71 (1.090) |
46/272 |
0.3 |
98.6% |
coding (1229/1557 nt) |
pdeN |
putative c‑di‑GMP phosphodiesterase PdeN |
| ? | NC_000913 |
2272935 = |
2 (0.030) | coding (572/1815 nt) |
yejA |
putative oligopeptide ABC transporter periplasmic binding protein |
GATK/CNVnator alignment
N/A
