Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A37 F60 I1 R1 17 71.1 2420944 99.2% 2401576 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,563,474 A→C intergenic (+357/‑118) yffP → / → yffQ CPZ‑55 prophage; uncharacterized protein YffP/CPZ‑55 prophage; uncharacterized protein YffQ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,563,4740AC100.0% 312.5 / NA 81intergenic (+357/‑118)yffP/yffQCPZ‑55 prophage; uncharacterized protein YffP/CPZ‑55 prophage; uncharacterized protein YffQ
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (40/41);  total (40/41)

TGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCGCA  >  NC_000913/2563338‑2563609
                                                                                                                                        |                                                                                                                                       
tGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGa                                                                                                                                      <  2:248946/140‑1 (MQ=255)
  aTGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGaaa                                                                                                                                    >  2:648408/1‑140 (MQ=255)
    ggCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAgg                                                                                                                                  <  1:648408/140‑1 (MQ=255)
    ggCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAgg                                                                                                                                  <  2:957469/140‑1 (MQ=255)
    ggCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAgg                                                                                                                                  <  2:36241/140‑1 (MQ=255)
    ggCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAgg                                                                                                                                  <  1:244121/140‑1 (MQ=255)
     gccgccGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGc                                                                                                                                 >  2:1111605/1‑140 (MQ=255)
     gccgccGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGc                                                                                                                                 >  2:39051/1‑140 (MQ=255)
       cgccgACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAg                                                                                                                               >  2:78/1‑140 (MQ=255)
       cgccgACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAg                                                                                                                               >  2:752983/1‑140 (MQ=255)
         ccgACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGtt                                                                                                                             <  1:711631/140‑1 (MQ=255)
            aCGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTccc                                                                                                                          <  1:214886/140‑1 (MQ=255)
                tGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCcaaca                                                                                                                      <  1:752983/140‑1 (MQ=255)
                       ttGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCcaacaa                                                                                                                     >  2:1030645/1‑134 (MQ=255)
                       ttGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCcaacaa                                                                                                                     <  1:1030645/134‑1 (MQ=255)
                          aTTAATTTCTGGACATTCAATACAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTAAGACATTTTTGATTAATTAAATCACCGAAAGGCAGTTCCGAACAACAAAATaaa                                                                                                            >  2:1140899/1‑140 (MQ=255)
                          aTTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCcaacaa                                                                                                                     >  1:225802/1‑131 (MQ=255)
                          aTTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCcaacaa                                                                                                                     <  2:225802/131‑1 (MQ=255)
                          aTTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATaaa                                                                                                            >  2:1071094/1‑140 (MQ=255)
                          aTTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGC‑TTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAg                                                                                                           >  2:187649/1‑140 (MQ=255)
                          aTTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGCGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATaaa                                                                                                            >  2:78165/1‑140 (MQ=255)
                             aaTTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGAt                                                                                                         <  1:362076/140‑1 (MQ=255)
                              aTTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGC‑TTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATgg                                                                                                       <  1:187649/140‑1 (MQ=255)
                               tttCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATgg                                                                                                       >  2:875334/1‑140 (MQ=255)
                                ttCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATggg                                                                                                      <  1:617414/140‑1 (MQ=255)
                                 tCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGa                                                                                                     >  2:876462/1‑140 (MQ=255)
                                     aaCATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTa                                                                                                 >  1:548809/1‑140 (MQ=255)
                                             aaTCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGaa                                                                                         <  1:330164/140‑1 (MQ=255)
                                             aaTCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGaa                                                                                         <  1:78/140‑1 (MQ=255)
                                                  aCTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAACGAAACGGt                                                                                    <  1:1111605/140‑1 (MQ=255)
                                                   cTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTg                                                                                   >  2:999507/1‑140 (MQ=255)
                                                       caccaAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGaa                                                                               <  1:1140899/140‑1 (MQ=255)
                                                        accaAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAg                                                                              >  2:290008/1‑140 (MQ=255)
                                                        accaAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAg                                                                              >  1:1017235/1‑140 (MQ=255)
                                                        accaAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAg                                                                              >  1:1086610/1‑140 (MQ=255)
                                                         ccaAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGt                                                                             <  2:258795/140‑1 (MQ=255)
                                                             aGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCt                                                                         >  1:596502/1‑140 (MQ=255)
                                                                caacaaGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTa                                                                      >  1:1174417/1‑140 (MQ=255)
                                                                     aGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGt                                                                 <  2:1174417/140‑1 (MQ=255)
                                                                         gggAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATg                                                             >  1:701696/1‑140 (MQ=255)
                                                                           gAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATgg                                                            >  1:1110305/1‑139 (MQ=255)
                                                                           gAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATgg                                                            <  2:1110305/139‑1 (MQ=255)
                                                                           gAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGt                                                           >  2:1155839/1‑140 (MQ=255)
                                                                             ggTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTaa                                                         <  1:290008/140‑1 (MQ=255)
                                                                              gTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTa                                                                      <  1:1145794/126‑1 (MQ=255)
                                                                              gTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTa                                                                      >  2:1145794/1‑126 (MQ=255)
                                                                              gTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAAt                                                        >  2:744922/1‑140 (MQ=255)
                                                                                gAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGt                                                      <  2:1086610/140‑1 (MQ=255)
                                                                                gAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGt                                                      <  1:1155839/140‑1 (MQ=255)
                                                                                 aaTTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGtt                                                     >  1:450862/1‑140 (MQ=255)
                                                                                 aaTTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGtt                                                     >  2:361998/1‑140 (MQ=255)
                                                                                 aaTTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGtt                                                     >  1:602338/1‑140 (MQ=255)
                                                                                 aaTTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGtt                                                     >  2:707194/1‑140 (MQ=255)
                                                                                    tttGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGt                                                  <  1:78165/140‑1 (MQ=255)
                                                                                      tgtgATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATgg                                                            <  1:40859/128‑1 (MQ=255)
                                                                                      tgtgATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATgg                                                            >  2:40859/1‑128 (MQ=255)
                                                                                       gtgATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTg                                               <  2:548809/140‑1 (MQ=255)
                                                                                       gtgATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTg                                               <  2:602338/140‑1 (MQ=255)
                                                                                       gtgATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTg                                               <  1:107761/140‑1 (MQ=255)
                                                                                       gtgATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTg                                               <  1:876462/140‑1 (MQ=255)
                                                                                       gtgATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTg                                               <  1:744922/140‑1 (MQ=255)
                                                                                        tgATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTg                                               <  2:1174683/139‑1 (MQ=255)
                                                                                        tgATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTg                                               >  1:1174683/1‑139 (MQ=255)
                                                                                           tGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGt                                           >  2:711165/1‑140 (MQ=255)
                                                                                           tGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGt                                           >  1:701537/1‑140 (MQ=255)
                                                                                             cAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTAt                                         >  1:1010313/1‑140 (MQ=255)
                                                                                               gATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTg                                       <  1:875334/140‑1 (MQ=255)
                                                                                                 tCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGaa                                     <  2:799388/140‑1 (MQ=255)
                                                                                                 tCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGaa                                     <  1:361998/140‑1 (MQ=255)
                                                                                                  cGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTg                                                    <  1:496364/124‑1 (MQ=255)
                                                                                                  cGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTg                                                    >  2:496364/1‑124 (MQ=255)
                                                                                                  cGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAAc                                    <  1:1163840/140‑1 (MQ=255)
                                                                                                  cGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAAc                                    <  2:450862/140‑1 (MQ=255)
                                                                                                   gCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTg                                               <  1:513940/128‑1 (MQ=255)
                                                                                                   gCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTg                                               >  2:513940/1‑128 (MQ=255)
                                                                                                       tttCCCTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGa                               >  1:435679/1‑140 (MQ=255)
                                                                                                          cccTTCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAagg                            >  2:281904/1‑140 (MQ=255)
                                                                                                             ttCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAaggagg                         >  1:354480/1‑140 (MQ=255)
                                                                                                             ttCAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAaggagg                         <  2:1010313/140‑1 (MQ=255)
                                                                                                               cAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAggagga                        >  1:33963/1‑139 (MQ=255)
                                                                                                               cAGGCATTTTTGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAggagga                        <  2:33963/139‑1 (MQ=255)
                                                                                                                       tttGTTTAATTCAATCACCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGaa               >  2:902659/1‑140 (MQ=255)
                                                                                                                                    atcacCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCGCa  <  1:902659/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
TGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCGCA  >  NC_000913/2563338‑2563609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A