Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F60 I1 R1 21 123.7 4184002 99.2% 4150529 137.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,732,402 Δ1 bp coding (1772/2574 nt) clpB ← ClpB chaperone

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,732,4020A.100.0% 527.4 / NA 121coding (1772/2574 nt)clpBClpB chaperone
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (59/62);  total (59/62)

Only 100 of 123 total aligned reads displayed.

CGGACATATCGATACGGACCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCCAGCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGCGCTCGCTTTCCATCATGCGAGAA  >  NC_000913/2732268‑2732530
                                                                                                                                      |                                                                                                                                
cGGACATATCGATACGGACCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCg                                                                                                                            <  1:64479/140‑1 (MQ=255)
 ggACATATCGATACGGACCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGc                                                                                                                           >  1:942637/1‑140 (MQ=255)
  gACATATCGATACGGACCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCa                                                                                                                          <  1:666574/140‑1 (MQ=255)
       attgATACGGACCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCt                                                                                                                     <  2:629286/137‑1 (MQ=255)
       atCGATACGGACCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCt                                                                                                                     <  2:1105249/140‑1 (MQ=255)
           aTACGGACCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTacga                                                                                                                 >  1:1177861/1‑140 (MQ=255)
             aCGGACCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTacgacg                                                                                                               >  2:669176/1‑140 (MQ=255)
               ggACCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGaa                                                                                                             <  1:1153603/140‑1 (MQ=255)
               ggACCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGaa                                                                                                             <  2:1262201/140‑1 (MQ=255)
               ggACCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGaa                                                                                                             <  1:204634/140‑1 (MQ=255)
                 aCCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGaa                                                                                                             >  1:1022459/1‑138 (MQ=255)
                 aCCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGaa                                                                                                             <  2:1022459/138‑1 (MQ=255)
                 aCCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGaa                                                                                                             <  2:1169028/138‑1 (MQ=255)
                 aCCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGaa                                                                                                             >  1:1169028/1‑138 (MQ=255)
                 aCCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATa                                                                                                           <  2:1424284/140‑1 (MQ=255)
                 aCCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATa                                                                                                           >  2:878636/1‑140 (MQ=255)
                 aCCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATa                                                                                                           >  1:1945868/1‑140 (MQ=255)
                 aCCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCCCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATa                                                                                                           >  2:1615811/1‑140 (MQ=255)
                   cATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGaa                                                                                                             >  1:492812/1‑136 (MQ=255)
                   cATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGaa                                                                                                             <  2:492812/136‑1 (MQ=255)
                   cATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGc                                                                                                         >  1:153900/1‑140 (MQ=255)
                   cATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGc                                                                                                         >  1:470958/1‑140 (MQ=255)
                    aTCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATa                                                                                                           >  2:1460250/1‑137 (MQ=255)
                    aTCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATa                                                                                                           <  1:1460250/137‑1 (MQ=255)
                     tCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGt                                                                                                       >  1:535507/1‑140 (MQ=255)
                     tCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGt                                                                                                       >  1:415021/1‑140 (MQ=255)
                      cGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACgg                                                                                                                       >  2:416934/1‑123 (MQ=255)
                      cGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACgg                                                                                                                       <  1:416934/123‑1 (MQ=255)
                         cTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGa                                                                                                   <  2:153900/140‑1 (MQ=255)
                          tcgtcgCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGNCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGAt                                                                                                  <  2:942637/140‑1 (MQ=255)
                           cgtcgCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATa                                                                                                           >  2:1044234/1‑130 (MQ=255)
                           cgtcgCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATa                                                                                                           <  1:1044234/130‑1 (MQ=255)
                           cgtcgCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATa                                                                                                 >  2:768769/1‑140 (MQ=255)
                            gtcgCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATAc                                                                                                <  2:1196480/140‑1 (MQ=255)
                            gtcgCTATCAAACATAAAGTTCGCCAGCCCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATAc                                                                                                <  1:1615811/140‑1 (MQ=255)
                             tcgCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATAcc                                                                                               >  1:1365459/1‑140 (MQ=255)
                               gCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGtt                                                                                                      >  1:705352/1‑131 (MQ=255)
                                 tATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATa                                                                                                 <  1:1112407/134‑1 (MQ=255)
                                 tATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATa                                                                                                 >  2:1112407/1‑134 (MQ=255)
                                    cAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCGCACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCaa                                                                                        <  2:459941/140‑1 (MQ=255)
                                    cAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCaa                                                                                        <  1:768769/140‑1 (MQ=255)
                                       aCATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCg                                                                                     >  2:1880720/1‑140 (MQ=255)
                                       aCATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCg                                                                                     >  2:1826587/1‑140 (MQ=255)
                                        cATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGc                                                                                    <  1:306921/140‑1 (MQ=255)
                                         aTAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCt                                                                                   <  1:1826587/140‑1 (MQ=255)
                                         aTAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCt                                                                                   <  1:1880720/140‑1 (MQ=255)
                                         aTAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCt                                                                                   <  1:2031595/140‑1 (MQ=255)
                                         aTAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCt                                                                                   <  1:816299/140‑1 (MQ=255)
                                           aaaGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTc                                                                                 >  1:329180/1‑140 (MQ=255)
                                             aGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCG‑TAGATACCGCATCAACCGCTTCGtt                                                                              >  2:758417/1‑140 (MQ=255)
                                               ttCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTc                                                                             >  1:1015048/1‑140 (MQ=255)
                                                  gCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGa                                                                          >  1:1449514/1‑140 (MQ=255)
                                                  gCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGa                                                                          >  1:1635905/1‑140 (MQ=255)
                                                    cAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGAcc                                                                        <  2:535507/140‑1 (MQ=255)
                                                         ccTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCt                                                                                   >  2:574356/1‑124 (MQ=255)
                                                             aCAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTAcgcg                                                               <  2:807882/140‑1 (MQ=255)
                                                              cAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGa                                                              <  2:1449514/140‑1 (MQ=255)
                                                                    tctGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTg                                                         >  1:1472083/1‑139 (MQ=255)
                                                                    tctGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTg                                                         <  2:1472083/139‑1 (MQ=255)
                                                                    tctGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGc                                                        >  2:1913774/1‑140 (MQ=255)
                                                                         tttCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTc                                                   <  2:310109/140‑1 (MQ=255)
                                                                         tttCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTc                                                   <  2:1635905/140‑1 (MQ=255)
                                                                         tttCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTc                                                   <  2:1177861/140‑1 (MQ=255)
                                                                         tttCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTc                                                   <  1:1913774/140‑1 (MQ=255)
                                                                           tCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCtt                                                 <  2:1365459/140‑1 (MQ=255)
                                                                             cccACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGc                                               >  2:497566/1‑140 (MQ=255)
                                                                                acacCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGa                                                              >  1:653105/1‑122 (MQ=255)
                                                                                acacCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGa                                                              <  2:653105/122‑1 (MQ=255)
                                                                                acacCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCtt                                                 <  1:545910/135‑1 (MQ=255)
                                                                                      gTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACgc                                      >  1:61225/1‑140 (MQ=255)
                                                                                       ttGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCa                                                       <  2:371682/122‑1 (MQ=255)
                                                                                       ttGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACgca                                     >  2:1639882/1‑140 (MQ=255)
                                                                                            ccGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACgca                                     <  2:1749520/135‑1 (MQ=255)
                                                                                            ccGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGt                                >  1:1442756/1‑140 (MQ=255)
                                                                                            ccGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGt                                >  2:978161/1‑140 (MQ=255)
                                                                                                ggAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGttttt                            >  2:37265/1‑140 (MQ=255)
                                                                                                ggAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGttttt                            >  1:235765/1‑140 (MQ=255)
                                                                                                 gAACAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTc                           >  2:27064/1‑140 (MQ=255)
                                                                                                    cAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACg                                       >  2:936379/1‑125 (MQ=255)
                                                                                                    cAGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACg                                       <  1:936379/125‑1 (MQ=255)
                                                                                                     aGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCgcgc                       <  1:391838/140‑1 (MQ=255)
                                                                                                     aGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCgcgc                       <  1:1639882/140‑1 (MQ=255)
                                                                                                     aGGAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCgcgc                       <  2:202667/140‑1 (MQ=255)
                                                                                                      ggAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGcgct                      <  2:1442756/140‑1 (MQ=255)
                                                                                                      ggAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGcgct                      <  2:415021/140‑1 (MQ=255)
                                                                                                      ggAATGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGATACGACAAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGcgct                      <  2:470958/140‑1 (MQ=255)
                                                                                                        aaTGAACCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGcgctcg                    <  1:1435715/140‑1 (MQ=255)
                                                                                                            aaCCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGCGCTCGCttt                >  1:65798/1‑140 (MQ=255)
                                                                                                            aaCCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGCGCTCGCttt                <  1:978161/140‑1 (MQ=255)
                                                                                                            aaCCAATCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGCGCTCGCttt                >  1:715888/1‑140 (MQ=255)
                                                                                                                 aTCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGCGCTCGCTTTCcatc           >  2:397928/1‑140 (MQ=255)
                                                                                                                 aTCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGCGCTCGCTTTCcatc           >  1:1339537/1‑140 (MQ=255)
                                                                                                                 aTCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGCGCTCGCTTTCcatc           >  1:921279/1‑140 (MQ=255)
                                                                                                                  tCGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGCGCTCGCTTTCcatca          <  2:65798/140‑1 (MQ=255)
                                                                                                                   cGGGCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGCGCTCGCTTTCcatcat         <  2:921279/140‑1 (MQ=255)
                                                                                                                    gggCGATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGCGCTCGCTTTCCATCATg        <  2:1015048/140‑1 (MQ=255)
                                                                                                                        gATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGCGCTCGCTTTCCATCATGCgag    <  2:1410738/140‑1 (MQ=255)
                                                                                                                        gATTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGCGCTCGCTTTCCATCATGCgag    <  2:1339537/140‑1 (MQ=255)
                                                                                                                         aTTTGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGCGCTCGCTTTCCATCATGCgaga   <  1:397928/140‑1 (MQ=255)
                                                                                                                          tttGGATCCGCC‑GCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGCGCTCGCTTTCCATCATGCGAGaa  <  2:235765/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                
CGGACATATCGATACGGACCATCGCCTCGTCGCTATCAAACATAAAGTTCGCCAGCGCCTTACAAAGCTCTGTTTTCCCCACACCAGTTGGGCCGAGGAACAGGAATGAACCAATCGGGCGATTTGGATCCGCCAGCCCCGCACGGCTACGACGAATAGCGTTAGATACCGCATCAACCGCTTCGTTCTGACCAATTACGCGATGGTGCAGTTCTTGCTCCATACGCAGCAGTTTTTCGCGCTCGCTTTCCATCATGCGAGAA  >  NC_000913/2732268‑2732530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A