Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F60 I1 R1
|
20 |
71.2 |
2416366 |
99.1% |
2394618 |
138.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,116,456 |
A→C |
V886G (GTT→GGT) |
yghJ ← |
putative lipoprotein YghJ |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,116,456 | 0 | A | C | 100.0%
| 271.8
/ NA
| 71 | V886G (GTT→GGT) | yghJ | putative lipoprotein YghJ |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (35/36); total (35/36) |
CGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGAACCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGA > NC_000913/3116321‑3116587
|
cGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACcccc < 2:254755/140‑1 (MQ=255)
gagCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAg > 2:968070/1‑140 (MQ=255)
agCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGc > 2:318998/1‑136 (MQ=255)
agCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGc < 1:318998/136‑1 (MQ=255)
tCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACg < 2:744400/140‑1 (MQ=255)
cATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGAcccc > 2:511855/1‑126 (MQ=255)
cATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGAcccc < 1:511855/126‑1 (MQ=255)
cATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGa > 1:783639/1‑140 (MQ=255)
tGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGata > 2:93211/1‑140 (MQ=255)
gCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGatat > 1:460751/1‑140 (MQ=255)
gATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGGCCCCCCGTGCCAGGACg < 1:311177/133‑1 (MQ=255)
gATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACg > 2:311177/1‑133 (MQ=255)
tACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAg > 1:324801/1‑140 (MQ=255)
aCAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAgg < 1:560036/140‑1 (MQ=255)
aCGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGt > 2:287957/1‑140 (MQ=255)
aCGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGt < 1:850315/140‑1 (MQ=255)
cGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGtt < 1:405371/140‑1 (MQ=255)
tGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCGAGGCAGTTGa < 1:347013/139‑1 (MQ=255)
tGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCGAGGCAGTTGa > 2:347013/1‑139 (MQ=255)
tGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGAc < 1:130150/140‑1 (MQ=255)
tGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGAc > 1:76579/1‑140 (MQ=255)
tGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCTTGCCAGGACGATATTCCAgg > 2:629334/1‑128 (MQ=255)
tGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCTTGCCAGGACGATATTCCAgg < 1:629334/128‑1 (MQ=255)
tGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCa < 2:783639/140‑1 (MQ=255)
tGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCa < 1:564408/140‑1 (MQ=255)
tGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCa < 2:32784/140‑1 (MQ=255)
ccGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGa < 2:193817/140‑1 (MQ=255)
ccGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGa < 2:99593/140‑1 (MQ=255)
cAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGa < 1:402418/137‑1 (MQ=255)
cAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGa > 2:402418/1‑137 (MQ=255)
cTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTac < 1:287957/140‑1 (MQ=255)
cATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCtt < 2:529148/140‑1 (MQ=255)
aTCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCttt > 2:732643/1‑140 (MQ=255)
tCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTc > 1:83701/1‑140 (MQ=255)
cGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCa > 2:350749/1‑140 (MQ=255)
cGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCa > 2:742354/1‑140 (MQ=255)
cGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCa > 2:1179550/1‑140 (MQ=255)
tgtCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAAc < 1:370999/140‑1 (MQ=255)
tCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAAcgc > 1:231471/1‑140 (MQ=255)
ttAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTtc < 2:76579/140‑1 (MQ=255)
aGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTtctc > 2:76372/1‑140 (MQ=255)
gCGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTc < 1:93211/140‑1 (MQ=255)
cGTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCg < 1:478158/140‑1 (MQ=255)
gTATACTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCAGGAACGCGGCGAAAATTTTCTCCTTCGc < 1:742354/140‑1 (MQ=255)
tataCTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCa < 2:460751/140‑1 (MQ=255)
tataCTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCa < 2:948547/140‑1 (MQ=255)
ataCTGTGGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAg < 1:76372/140‑1 (MQ=255)
gtgGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTc > 1:976206/1‑140 (MQ=255)
tgGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCa > 2:725613/1‑140 (MQ=255)
tgGAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCa > 2:874507/1‑140 (MQ=255)
ggAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCag > 1:656637/1‑140 (MQ=255)
ggAACATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCag > 2:56013/1‑140 (MQ=255)
aaCATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCa > 1:278208/1‑130 (MQ=255)
aaCATACATGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCa < 2:278208/130‑1 (MQ=255)
atacatGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAAt > 1:1105590/1‑140 (MQ=255)
atacatGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAAt > 2:708678/1‑140 (MQ=255)
atacatGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAAt > 1:761923/1‑140 (MQ=255)
atacatGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAAt > 1:362820/1‑140 (MQ=255)
acatGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATcc < 1:968070/140‑1 (MQ=255)
acatGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATcc > 2:80705/1‑140 (MQ=255)
catGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCct < 2:761923/140‑1 (MQ=255)
catGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCct < 1:725613/140‑1 (MQ=255)
catGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCct < 1:1179550/140‑1 (MQ=255)
atGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCctc < 2:806071/140‑1 (MQ=255)
atGCCACCAGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCctc > 1:554079/1‑140 (MQ=255)
accaGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGTAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCctct < 1:1096968/136‑1 (MQ=255)
accaGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGTAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCctct > 2:1096968/1‑136 (MQ=255)
accaGTAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGttt > 1:810547/1‑140 (MQ=255)
tAACCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGa < 1:708678/140‑1 (MQ=255)
aCCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATcc < 1:650554/126‑1 (MQ=255)
aCCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATcc > 2:650554/1‑126 (MQ=255)
aCCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGa < 1:1144504/138‑1 (MQ=255)
aCCGGACCCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGa > 2:1144504/1‑138 (MQ=255)
|
CGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGTATACTGTGGAACATACATGCCACCAGTAACCGGAACCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGA > NC_000913/3116321‑3116587
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
