Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A24 F60 I1 R1	19	84.9	2879288	99.1%	2853374	137.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,786,417	A→G	pseudogene (21/2253 nt)	ygaQ →	putative uncharacterized protein YgaQ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,786,417	0	A	G	99.1%	427.1 / ‑4.7	110	pseudogene (21/2253 nt)	ygaQ	putative uncharacterized protein YgaQ
Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (55/54); total (56/54)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.29e-01

Only 100 of 110 total aligned reads displayed.

TTCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCTTGTGGAGTTTACC  >  NC_000913/2786281‑2786550

ttCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGccc                                                                                                                                    <  1:1236943/140‑1 (MQ=255)

     tataAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGaaa                                                                                                                               >  2:1232288/1‑140 (MQ=255)

     tataAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGaaa                                                                                                                               >  1:568596/1‑140 (MQ=255)

          atatTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTAc                                                                                                                          <  1:1418774/140‑1 (MQ=255)

                gATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCg                                                                                                                    >  1:1128044/1‑140 (MQ=255)

                 aTAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGa                                                                                                                   <  2:146921/140‑1 (MQ=255)

                  tAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGa                                                                                                                   >  1:225333/1‑139 (MQ=255)

                  tAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGAc                                                                                                                  >  2:1384410/1‑140 (MQ=255)

                    aaaGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACaa                                                                                                                >  1:955621/1‑140 (MQ=255)

                     aaGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAAc                                                                                                               >  1:880013/1‑140 (MQ=255)

                     aaGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAAc                                                                                                               >  2:168043/1‑140 (MQ=255)

                      aGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAAcc                                                                                                              <  2:880013/140‑1 (MQ=255)

                       gTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTCCCTATCGACAAccc                                                                                                             <  2:1198059/140‑1 (MQ=255)

                       gTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAAccc                                                                                                             <  2:19687/140‑1 (MQ=255)

                          ggACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGAc                                                                                                                  >  2:699026/1‑132 (MQ=255)

                          ggACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGAc                                                                                                                  >  2:1238080/1‑132 (MQ=255)

                          ggACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGAc                                                                                                                  <  1:1238080/132‑1 (MQ=255)

                          ggACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGAc                                                                                                                  <  1:699026/132‑1 (MQ=255)

                          ggACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCcac                                                                                                          >  1:731372/1‑140 (MQ=255)

                          ggACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCcac                                                                                                          >  1:1009264/1‑140 (MQ=255)

                               tCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGt                                                                                                     >  2:1300017/1‑140 (MQ=255)

                                cTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGa                                                                                                                   <  2:1129662/125‑1 (MQ=255)

                                cTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGa                                                                                                                   >  1:1129662/1‑125 (MQ=255)

                                cTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCca                                                                                                           >  1:57875/1‑133 (MQ=255)

                                cTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCca                                                                                                           <  2:57875/133‑1 (MQ=255)

                                cTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGtt                                                                                                    <  2:810438/140‑1 (MQ=255)

                                cTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGtt                                                                                                    >  2:671540/1‑140 (MQ=255)

                                 tGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTa                                                                                                   <  2:106352/140‑1 (MQ=255)

                                  gTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGa                                                                                                                   <  1:366582/123‑1 (MQ=255)

                                  gTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGa                                                                                                                   >  2:366582/1‑123 (MQ=255)

                                  gTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTa                                                                                                   >  2:910954/1‑139 (MQ=255)

                                  gTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTa                                                                                                   <  1:910954/139‑1 (MQ=255)

                                  gTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTAt                                                                                                  >  2:233203/1‑140 (MQ=255)

                                    ttGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCa                                                                                                <  2:132673/140‑1 (MQ=255)

                                    ttGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCa                                                                                                <  2:731372/140‑1 (MQ=255)

                                     tGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGt                                                                                                     <  1:167610/134‑1 (MQ=255)

                                     tGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGt                                                                                                     >  2:167610/1‑134 (MQ=255)

                                     tGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCAt                                                                                               >  1:486383/1‑140 (MQ=255)

                                        aaTTACTTTCACAACAATTAAACATTATTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCca                                                                                                           >  1:974274/1‑125 (MQ=255)

                                        aaTTACTTTCACAACAATTAAACATTATTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCca                                                                                                           <  2:974274/125‑1 (MQ=255)

                                         aTTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGaa                                                                                           <  1:1232288/140‑1 (MQ=255)

                                         aTTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGaa                                                                                           <  1:334188/140‑1 (MQ=255)

                                             cTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACAtt                                                                                       >  1:107716/1‑140 (MQ=255)

                                                  acaacaATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGa                                                                                  >  2:692511/1‑140 (MQ=255)

                                                       aaTTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACgggg                                                                             <  1:692511/140‑1 (MQ=255)

                                                        aTTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGa                                                                            >  1:774108/1‑140 (MQ=255)

                                                                 ttttATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTc                                                                   >  2:36213/1‑140 (MQ=255)

                                                                 ttttATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTc                                                                   >  2:10892/1‑140 (MQ=255)

                                                                  tttATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTcc                                                                  <  1:10892/140‑1 (MQ=255)

                                                                          tCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTaaa                                                          <  2:1009264/140‑1 (MQ=255)

                                                                          tCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTaaa                                                          <  1:168043/140‑1 (MQ=255)

                                                                           ccGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTcc                                                                  >  1:844142/1‑131 (MQ=255)

                                                                           ccGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTcc                                                                  <  2:844142/131‑1 (MQ=255)

                                                                           ccGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAAt                                                         >  2:904192/1‑140 (MQ=255)

                                                                           ccGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAAt                                                         <  2:1128044/140‑1 (MQ=255)

                                                                           ccGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACAAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAAt                                                         >  2:462691/1‑140 (MQ=255)

                                                                              tataCATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACa                                                      <  2:726085/140‑1 (MQ=255)

                                                                                  catcatATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAg                                                  <  2:486383/140‑1 (MQ=255)

                                                                                  catcatATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAg                                                  <  1:1096782/140‑1 (MQ=255)

                                                                                  catcatATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAg                                                  <  2:955621/140‑1 (MQ=255)

                                                                                    tcatATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGaa                                                <  1:36213/140‑1 (MQ=255)

                                                                                    tcatATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGaa                                                <  1:1384410/140‑1 (MQ=255)

                                                                                     catATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAat                                               >  2:807295/1‑140 (MQ=255)

                                                                                     catATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAat                                               <  2:518700/140‑1 (MQ=255)

                                                                                     catATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAat                                               >  2:915100/1‑140 (MQ=255)

                                                                                        atTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATc                                            >  1:57337/1‑140 (MQ=255)

                                                                                          tACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTaaa                                                          >  2:178386/1‑124 (MQ=255)

                                                                                          tACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTa                                          >  1:1089237/1‑140 (MQ=255)

                                                                                            ctctACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTaaa                                        >  1:1229440/1‑140 (MQ=255)

                                                                                            ctctACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTaaa                                        <  2:774108/140‑1 (MQ=255)

                                                                                               tACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAg                                                  >  2:670603/1‑127 (MQ=255)

                                                                                               tACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAg                                                  <  1:670603/127‑1 (MQ=255)

                                                                                               tACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGaa                                                >  2:699989/1‑129 (MQ=255)

                                                                                               tACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGaa                                                <  1:699989/129‑1 (MQ=255)

                                                                                               tACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTg                                     <  2:57337/140‑1 (MQ=255)

                                                                                                aCCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGt                                    <  2:238363/140‑1 (MQ=255)

                                                                                                aCCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGt                                    >  2:1109714/1‑140 (MQ=255)

                                                                                                 ccATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTaaa                                        >  2:663096/1‑135 (MQ=255)

                                                                                                 ccATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTaaa                                        <  1:663096/135‑1 (MQ=255)

                                                                                                    ttAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTa                                          >  2:1198949/1‑130 (MQ=255)

                                                                                                    ttAGAGGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTa                                          <  1:1198949/130‑1 (MQ=255)

                                                                                                      agagGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTaaa                                        >  1:527485/1‑130 (MQ=255)

                                                                                                      agagGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTaaa                                        <  2:527485/130‑1 (MQ=255)

                                                                                                      agagGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACa                              >  1:309976/1‑140 (MQ=255)

                                                                                                      agagGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACa                              >  1:325738/1‑140 (MQ=255)

                                                                                                      agagGAACTTTATTATGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACa                              >  1:1022280/1‑140 (MQ=255)

                                                                                                      agagGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACa                              >  1:689014/1‑140 (MQ=255)

                                                                                                               ttattaTGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGATGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATattatt                     <  1:137395/140‑1 (MQ=255)

                                                                                                               ttattaTGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATattatt                     <  1:236767/140‑1 (MQ=255)

                                                                                                                 attatGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTaa                   <  1:345522/140‑1 (MQ=255)

                                                                                                                     tGTTTTCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCt               >  2:133030/1‑140 (MQ=255)

                                                                                                                       ttttCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCTtg             <  1:671540/140‑1 (MQ=255)

                                                                                                                        tttCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCTtgt            <  1:159504/140‑1 (MQ=255)

                                                                                                                        tttCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCTtgt            >  2:159504/1‑140 (MQ=255)

                                                                                                                          tCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAAtttgttata          <  2:325738/140‑8 (MQ=255)

                                                                                                                          tCTATAAAACCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAAtttgttata          <  2:309976/140‑8 (MQ=255)

                                                                                                                               aaaaCCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCTtgt            <  1:1174147/133‑1 (MQ=255)

                                                                                                                               aaaaCCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCTtgt            >  2:1174147/1‑133 (MQ=255)

                                                                                                                               aaaaCCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCTTGTGGAGttt     >  1:989817/1‑140 (MQ=255)

                                                                                                                                  aCCAGGGCCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCTTGTGGAGTTTAcc  <  1:768044/140‑1 (MQ=255)

TTCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCTTGTGGAGTTTACC  >  NC_000913/2786281‑2786550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A