Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A46 F60 I1 R1 17 83.7 2854354 99.1% 2828664 138.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,449,907 A→T D109E (GAT→GAA)  rplV ← 50S ribosomal subunit protein L22

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,449,9070AT100.0% 350.1 / NA 98D109E (GAT→GAA) rplV50S ribosomal subunit protein L22
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (51/47);  total (51/47)

TTAAAATCGCTGTCCAGGTTGTCAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGATCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGTAACTTTCAGATCGTCAATGT  >  NC_000913/3449771‑3450040
                                                                                                                                        |                                                                                                                                     
ttAAAATCGCTGTCCAGGTTGTCAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCg                                                                                                                                    <  1:576163/140‑1 (MQ=255)
  aaaaTCGCTGTCCAGGTTGTCAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGa                                                                                                                                  <  2:243296/140‑1 (MQ=255)
   aaaTCGCTGTCCAGGTTGTCAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGac                                                                                                                                 >  2:588049/1‑140 (MQ=255)
    aaTCGCTGTCCAGGTTGTCAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGaca                                                                                                                                <  2:1322036/140‑1 (MQ=255)
    aaTCGCTGTCCAGGTTGTCAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGaca                                                                                                                                <  1:1416050/140‑1 (MQ=255)
         cTGTCCAGGTTGTCAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGa                                                                                                                                  >  2:657874/1‑133 (MQ=255)
         cTGTCCAGGTTGTCAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGa                                                                                                                                  <  1:657874/133‑1 (MQ=255)
          tGTCCAGGTTGTCAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACca                                                                                                                          <  1:103216/140‑1 (MQ=255)
          tGTCCAGGTTGTCAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACca                                                                                                                          <  1:689815/140‑1 (MQ=255)
            tCCAGGTTGTCAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACcaca                                                                                                                        <  1:553809/140‑1 (MQ=255)
            tCCAGGTTGTCAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACcaca                                                                                                                        <  1:592841/140‑1 (MQ=255)
            tCCAGGTTGTCAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACcaca                                                                                                                        <  1:617000/140‑1 (MQ=255)
            tCCAGGTTGTCAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACcaca                                                                                                                        <  2:1398522/140‑1 (MQ=255)
                    gTCAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGa                                                                                                                    >  2:1152969/1‑136 (MQ=255)
                    gTCAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGa                                                                                                                    <  1:1152969/136‑1 (MQ=255)
                    gTCAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGAtgtg                                                                                                                >  2:978960/1‑140 (MQ=255)
                      cAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGaca                                                                                                                                <  2:329001/122‑1 (MQ=255)
                      cAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGaca                                                                                                                                >  1:227747/1‑122 (MQ=255)
                      cAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGaca                                                                                                                                >  1:329001/1‑122 (MQ=255)
                      cAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGaca                                                                                                                                <  2:227747/122‑1 (MQ=255)
                      cAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACcaca                                                                                                                        <  2:656815/130‑1 (MQ=255)
                      cAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACcaca                                                                                                                        >  1:656815/1‑130 (MQ=255)
                      cAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACcac                                                                                                                         <  1:779038/129‑1 (MQ=255)
                      cAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACcac                                                                                                                         >  2:779038/1‑129 (MQ=255)
                      cAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGc                                                                                                              >  1:758300/1‑140 (MQ=255)
                      cAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGc                                                                                                              >  1:307914/1‑140 (MQ=255)
                        gCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTg                                                                                                            <  2:1386207/140‑1 (MQ=255)
                          gAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGt                                                                                                          <  1:633635/140‑1 (MQ=255)
                          gAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGt                                                                                                          <  2:1012021/140‑1 (MQ=255)
                          gAATTCCTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGt                                                                                                          <  2:804481/140‑1 (MQ=255)
                           aaTTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTg                                                                                                         <  1:1005838/140‑1 (MQ=255)
                           aaTTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTg                                                                                                         <  1:588049/140‑1 (MQ=255)
                           aaTTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTg                                                                                                         <  1:1211371/140‑1 (MQ=255)
                           aaTTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTg                                                                                                         <  1:978960/140‑1 (MQ=255)
                                 ttGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTc                                                                                                   <  2:307914/140‑1 (MQ=255)
                                        tCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGc                                                                                            >  2:428758/1‑140 (MQ=255)
                                        tCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGc                                                                                            >  1:684936/1‑140 (MQ=255)
                                         cGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTTCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCg                                                                                           >  1:76014/1‑140 (MQ=255)
                                               ccAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGc                                                                                     >  2:400086/1‑140 (MQ=255)
                                                   gTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGa                                                                                 >  2:667794/1‑140 (MQ=255)
                                                         ttCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCtttt                                                                           <  1:400086/140‑1 (MQ=255)
                                                         ttCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCtttt                                                                           <  1:127845/140‑1 (MQ=255)
                                                           ccATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGc                                                                         >  1:11118/1‑140 (MQ=255)
                                                            cATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCa                                                                        >  1:911751/1‑140 (MQ=255)
                                                                   ttACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCa                                                                 >  1:141478/1‑140 (MQ=255)
                                                                       aaTACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAAt                                                             <  2:618338/140‑1 (MQ=255)
                                                                        aTACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATg                                                            <  1:1332201/140‑1 (MQ=255)
                                                                        aTACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATg                                                            <  1:667794/140‑1 (MQ=255)
                                                                           cccAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATgcgc                                                         >  2:720807/1‑140 (MQ=255)
                                                                           cccAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATgcgc                                                         >  2:1167352/1‑140 (MQ=255)
                                                                           cccAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATgcgc                                                         >  2:325451/1‑140 (MQ=255)
                                                                           cccAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATgcgc                                                         >  1:404661/1‑140 (MQ=255)
                                                                              aGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATa                                                               >  1:400481/1‑131 (MQ=255)
                                                                              aGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATa                                                               <  2:400481/131‑1 (MQ=255)
                                                                              aGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTc                                                      <  2:1351241/140‑1 (MQ=255)
                                                                                 cGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTc                                                      >  2:762317/1‑137 (MQ=255)
                                                                                 cGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTc                                                      <  1:762317/137‑1 (MQ=255)
                                                                                   aaTACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCt                                                 >  1:728074/1‑140 (MQ=255)
                                                                                   aaTACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCt                                                 >  2:1247587/1‑140 (MQ=255)
                                                                                     tACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCt                                                 <  2:949007/138‑1 (MQ=255)
                                                                                     tACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCt                                                 >  1:949007/1‑138 (MQ=255)
                                                                                     tACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCt                                                 >  1:1314856/1‑138 (MQ=255)
                                                                                     tACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCt                                                 <  2:1314856/138‑1 (MQ=255)
                                                                                     tACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCg                                               >  2:498330/1‑140 (MQ=255)
                                                                                          ttAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCt                                          >  1:195957/1‑140 (MQ=255)
                                                                                          ttAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCt                                          >  2:86482/1‑140 (MQ=255)
                                                                                                  tACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCt                                                 <  2:684400/125‑1 (MQ=255)
                                                                                                  tACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCt                                                 >  1:684400/1‑125 (MQ=255)
                                                                                                  tACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTAc                                  >  2:793172/1‑140 (MQ=255)
                                                                                                  tACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTAc                                  >  2:738593/1‑140 (MQ=255)
                                                                                                  tACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTAc                                  >  2:434507/1‑140 (MQ=255)
                                                                                                  tACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTAc                                  >  2:1068482/1‑140 (MQ=255)
                                                                                                    cTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGa                                >  1:1329285/1‑140 (MQ=255)
                                                                                                    cTTTCTGACCCATTGCTAGTCTCCAGAGCCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGCCTACGa                                >  1:1078170/1‑140 (MQ=255)
                                                                                                       tCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGaaaa                             >  1:622713/1‑140 (MQ=255)
                                                                                                       tCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGaaaa                             >  1:577362/1‑140 (MQ=255)
                                                                                                       tCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGaaaa                             >  1:334279/1‑140 (MQ=255)
                                                                                                        cTGACCCATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGTACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAAt                            >  1:1291376/1‑140 (MQ=255)
                                                                                                            cccATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTc                        >  2:337859/1‑140 (MQ=255)
                                                                                                            cccATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTc                        >  2:902652/1‑140 (MQ=255)
                                                                                                             ccATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCg                       <  2:622713/140‑1 (MQ=255)
                                                                                                              cATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGt                      <  2:334279/140‑1 (MQ=255)
                                                                                                              cATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGt                      <  1:434507/140‑1 (MQ=255)
                                                                                                              cATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGt                      <  1:325451/140‑1 (MQ=255)
                                                                                                              cATTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGt                      <  1:720807/140‑1 (MQ=255)
                                                                                                               aTTGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGTa                     >  2:987194/1‑140 (MQ=255)
                                                                                                                 tGCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGTAAc                   >  2:1335942/1‑140 (MQ=255)
                                                                                                                  gCTAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGTAACt                  <  2:141478/140‑1 (MQ=255)
                                                                                                                    tAGTCTCCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGTAACttt                <  1:1068482/140‑1 (MQ=255)
                                                                                                                       tctcCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGTAACTTTCAg             >  1:568593/1‑140 (MQ=255)
                                                                                                                        ctcCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGTAACTTTCAGa            <  2:76014/140‑1 (MQ=255)
                                                                                                                        ctcCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGTAACTTTCAGa            <  2:728074/140‑1 (MQ=255)
                                                                                                                        ctcCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGTAACTTTCAGa            <  2:195957/140‑1 (MQ=255)
                                                                                                                        ctcCAGAGTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGTAACTTTCAGa            <  2:911751/140‑1 (MQ=255)
                                                                                                                              agTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGTAACTTTCAGATCGTCa      >  1:463527/1‑140 (MQ=255)
                                                                                                                              agTCTCAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGTAACTTTCAGATCGTCa      >  1:714603/1‑140 (MQ=255)
                                                                                                                                  tcAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGTAACTTTCAGATCGTCAATGt  >  1:1079194/1‑140 (MQ=255)
                                                                                                                                  tcAGCGTTCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGTAACTTTCAGATCGTCAATGt  >  2:856688/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                     
TTAAAATCGCTGTCCAGGTTGTCAGCGAATTCTTTGGTGTTCGCAAACCAGGTAGAGTTCCATGGTTTTACAATACCCAGGCGAATACCATTAGGATGTACTTTCTGACCCATTGCTAGTCTCCAGAGTCTCAGCGATCGGACACAACCACAGTGATGTGGCTGGTGCGCTTCAGGATGCGATCTGCACGACCTTTTGCACGCGGCATAATGCGCTTCATGCTCGGGCCTTCGTCTACGAAAATTTTCGTAACTTTCAGATCGTCAATGT  >  NC_000913/3449771‑3450040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A