Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 169 80.7 2736954 99.0% 2709584 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,340,902 A→G T210A (ACG→GCG)  yrbG → putative transport protein YrbG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,340,9020AG100.0% 275.8 / NA 75T210A (ACG→GCG) yrbGputative transport protein YrbG
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (42/33);  total (42/33)

GAGCTGCCGCGTGACGGCGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGACGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAATATCATTGGCGCAAACATTTTTAATATTGTCATCG  >  NC_000913/3340767‑3341037
                                                                                                                                       |                                                                                                                                       
gagCTGCCGCGTGACGGCGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGAt                                                                                                                                     <  2:382697/140‑1 (MQ=255)
           tGACGGCGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGGTGGGGGTTGATAACGCCACGGTGCTGTCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGGCTGActg                                                                                                                          >  2:1263273/1‑138 (MQ=255)
           tGACGGCGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACgg                                                                                                                          <  1:676339/140‑1 (MQ=255)
            gACGGCGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGc                                                                                                                         <  2:1079374/140‑1 (MQ=255)
              cggcggATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCaa                                                                                                                       <  1:270075/140‑1 (MQ=255)
              cggcggATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCaa                                                                                                                       <  2:687614/140‑1 (MQ=255)
                 cggATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGGGTTGGCGATGGGTCTGACGGCAATTg                                                                                                                    <  2:846869/140‑1 (MQ=255)
                           gTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAAc                                                                                                          >  1:1055983/1‑140 (MQ=255)
                                gTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGcc                                                                                                     <  2:395533/140‑1 (MQ=255)
                                          cTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGGTGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGCCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACt                                                                                           >  2:934342/1‑140 (MQ=255)
                                             ggCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGc                                                                                        <  2:427272/140‑1 (MQ=255)
                                                aTTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAAc                                                                                     <  1:1316490/140‑1 (MQ=255)
                                                     gcTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCaa                                                                                <  1:1263273/140‑1 (MQ=255)
                                                         atcatcATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGc                                                                            >  1:100557/1‑140 (MQ=255)
                                                              catGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCggggg                                                                       >  2:933244/1‑140 (MQ=255)
                                                              catGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCggggg                                                                       >  1:687925/1‑140 (MQ=255)
                                                                 gCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTc                                                                    >  2:962920/1‑140 (MQ=255)
                                                                 gCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTc                                                                    >  2:1051798/1‑140 (MQ=255)
                                                                    aGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCa                                                                 <  2:540925/140‑1 (MQ=255)
                                                                      tGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCaaa                                                               >  1:112663/1‑140 (MQ=255)
                                                                      tGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCaaa                                                               >  2:1364038/1‑140 (MQ=255)
                                                                       ggCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAg                                                              <  2:144624/140‑1 (MQ=255)
                                                                          cACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTg                                                           <  1:1335803/140‑1 (MQ=255)
                                                                          cACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTg                                                           >  2:1335803/1‑140 (MQ=255)
                                                                           aCGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGa                                                          >  2:990899/1‑140 (MQ=255)
                                                                            cgcgGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGaa                                                         <  1:933244/140‑1 (MQ=255)
                                                                                       gtTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTTTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGc                                              >  1:1102285/1‑140 (MQ=255)
                                                                                       gtTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACa                                                  <  1:1188917/136‑1 (MQ=255)
                                                                                       gtTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACa                                                  >  2:1188917/1‑136 (MQ=255)
                                                                                         tGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTg                                            >  2:809552/1‑140 (MQ=255)
                                                                                          gATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGt                                           <  2:1366622/140‑1 (MQ=255)
                                                                                          gATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGCCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGt                                           <  1:934342/140‑1 (MQ=255)
                                                                                           aTAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTTTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTc                                          <  2:1102285/140‑1 (MQ=255)
                                                                                           aTAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTc                                          >  2:1141904/1‑140 (MQ=255)
                                                                                           aTAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTc                                          <  1:962920/140‑1 (MQ=255)
                                                                                            tAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGTGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCg                                         <  1:1046886/140‑1 (MQ=255)
                                                                                             aaCGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGt                                           >  2:1085045/1‑137 (MQ=255)
                                                                                             aaCGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGt                                           <  1:1085045/137‑1 (MQ=255)
                                                                                               cGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCgg                                        <  1:582360/138‑1 (MQ=255)
                                                                                               cGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCgg                                        >  2:582360/1‑138 (MQ=255)
                                                                                               cGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGaa                                      >  2:1013887/1‑140 (MQ=255)
                                                                                               cGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGaa                                      >  2:37429/1‑140 (MQ=255)
                                                                                                 ccACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAat                                    >  1:207793/1‑140 (MQ=255)
                                                                                                 ccACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAat                                    >  1:863708/1‑140 (MQ=255)
                                                                                                  cACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAata                                   >  1:644895/1‑140 (MQ=255)
                                                                                                  cACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAata                                   >  2:987209/1‑140 (MQ=255)
                                                                                                    cGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATc                                 >  1:1100726/1‑140 (MQ=255)
                                                                                                     ggTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCa                                >  2:284081/1‑140 (MQ=255)
                                                                                                      gTGCTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCAt                               <  1:683869/140‑1 (MQ=255)
                                                                                                         cTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTgg                            >  2:1251181/1‑140 (MQ=255)
                                                                                                         cTGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTgg                            >  1:588823/1‑140 (MQ=255)
                                                                                                          tGGCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGgc                           >  2:1363446/1‑140 (MQ=255)
                                                                                                          tGGCGAATTACTTTGCCATCAGCGAATTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGgc                           >  2:878577/1‑140 (MQ=255)
                                                                                                           ggCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGgcg                          <  2:112663/140‑1 (MQ=255)
                                                                                                            gCGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGgcgc                         >  1:195453/1‑140 (MQ=255)
                                                                                                             cGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCa                        >  1:245124/1‑140 (MQ=255)
                                                                                                             cGAATTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCa                        <  2:644895/140‑1 (MQ=255)
                                                                                                              gAATTACTTTGCCATCAGCGAATTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCaa                       <  1:878577/140‑1 (MQ=255)
                                                                                                               aaTTACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCaaa                      <  1:284081/140‑1 (MQ=255)
                                                                                                                 ttACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCaaa                      <  2:885054/138‑1 (MQ=255)
                                                                                                                 ttACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCaaa                      >  1:885054/1‑138 (MQ=255)
                                                                                                                 ttACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCAAACa                    >  1:1004757/1‑140 (MQ=255)
                                                                                                                 ttACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCAAACa                    >  1:177939/1‑140 (MQ=255)
                                                                                                                 ttACTTTGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCAAACa                    >  1:242423/1‑140 (MQ=255)
                                                                                                                      ttGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCAAACAttttt               <  2:195453/140‑1 (MQ=255)
                                                                                                                      ttGCCATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAACCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCAAACAttttt               <  1:963436/140‑1 (MQ=255)
                                                                                                                         ccATCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCAAACATTTTTAat            >  1:811985/1‑140 (MQ=255)
                                                                                                                           aTCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCAAACATTTTTAatat          >  2:470796/1‑140 (MQ=255)
                                                                                                                            tCAGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCAAACATTTTTAATAtt         >  2:1050465/1‑140 (MQ=255)
                                                                                                                              aGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCAAACATTTTTAATATTGt       >  1:1088210/1‑140 (MQ=255)
                                                                                                                              aGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCAAACATTTTTAATATTGt       >  1:292977/1‑140 (MQ=255)
                                                                                                                              aGCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCAAACATTTTTAATATTGt       >  1:452914/1‑140 (MQ=255)
                                                                                                                               gCGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCAAACATTTTTAATATTGTc      <  1:987209/140‑1 (MQ=255)
                                                                                                                                cGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCAAACATTTTTAATATTGTCa     <  2:177939/140‑1 (MQ=255)
                                                                                                                                cGAGTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCAAACATTTTTAATATTGTCa     <  1:109772/140‑1 (MQ=255)
                                                                                                                                   gTTGGCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAACCGACATTGCTGTCGGAAATATCATTGGCGCAAACATTTTTAATATTGTCATCg  >  1:1038871/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                       
GAGCTGCCGCGTGACGGCGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGACGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAATATCATTGGCGCAAACATTTTTAATATTGTCATCG  >  NC_000913/3340767‑3341037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A