Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 228 65.7 2434974 91.7% 2232871 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,313,824 T→C T731A (ACC→GCC)  infB ← translation initiation factor IF‑2

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,313,8240TC100.0% 246.7 / NA 69T731A (ACC→GCC) infBtranslation initiation factor IF‑2
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (33/36);  total (33/36)

AATCAGGTTATAGATGACGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGATCGCTTCGACAGAACCCTGTACGTCTGCCTTCAGGACGATATTCACTTCGTGAACT  >  NC_000913/3313690‑3313960
                                                                                                                                      |                                                                                                                                        
aaTCAGGTTATAGATGACGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCgg                                                                                                                                     <  1:769640/140‑1 (MQ=255)
         ataGATGACGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCg                                                                                                                                      <  1:1046131/130‑1 (MQ=255)
         ataGATGACGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCg                                                                                                                                      >  2:1046131/1‑130 (MQ=255)
         ataGATGACGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGt                                                                                                                                    <  2:870527/132‑1 (MQ=255)
         ataGATGACGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGt                                                                                                                                    >  1:870527/1‑132 (MQ=255)
          taGATGACGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATaccacc                                                                                                                           <  2:389404/140‑1 (MQ=255)
            gATGACGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTa                                                                                                                         <  2:214146/140‑1 (MQ=255)
            gATGACGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTa                                                                                                                         >  2:1214554/1‑140 (MQ=255)
                aCGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGcc                                                                                                                     >  1:1129481/1‑140 (MQ=255)
                aCGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGcc                                                                                                                     >  2:855178/1‑140 (MQ=255)
                aCGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGcc                                                                                                                     >  2:748527/1‑140 (MQ=255)
                aCGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGcc                                                                                                                     >  1:137269/1‑140 (MQ=255)
                aCGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGcc                                                                                                                     >  1:363088/1‑140 (MQ=255)
                aCGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGCACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGcc                                                                                                                     >  2:1068189/1‑140 (MQ=255)
                 cGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCa                                                                                                                    >  1:160165/1‑140 (MQ=255)
                 cGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCa                                                                                                                    <  2:958749/140‑1 (MQ=255)
                     gtagtaACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAAc                                                                                                                <  2:651418/140‑1 (MQ=255)
                      tagtaACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAAcc                                                                                                               >  2:63639/1‑140 (MQ=255)
                        gtaACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCga                                                                                                             <  2:1129481/140‑1 (MQ=255)
                          aaCGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCgatg                                                                                                           <  1:63639/140‑1 (MQ=255)
                           aCGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAAc                                                                                                                >  1:103293/1‑134 (MQ=255)
                           aCGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAAc                                                                                                                <  2:103293/134‑1 (MQ=255)
                           aCGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCgatga                                                                                                          >  2:243836/1‑140 (MQ=255)
                           aCGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCgatg                                                                                                           >  2:641711/1‑139 (MQ=255)
                           aCGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCgatg                                                                                                           <  1:641711/139‑1 (MQ=255)
                              cAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCt                                                                                                       >  2:640383/1‑140 (MQ=255)
                              cAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCt                                                                                                       >  2:536471/1‑140 (MQ=255)
                              cAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCt                                                                                                       >  1:997666/1‑140 (MQ=255)
                                     aGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACttt                                                                                                >  2:206794/1‑140 (MQ=255)
                                      ggCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTa                                                                                               <  1:1131326/140‑1 (MQ=255)
                                          ttCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACtt                                                                                           <  1:362552/140‑1 (MQ=255)
                                          ttCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACtt                                                                                           <  2:160165/140‑1 (MQ=255)
                                           tCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTc                                                                                          >  2:576188/1‑140 (MQ=255)
                                           tCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTc                                                                                          >  1:490381/1‑140 (MQ=255)
                                            ccGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCg                                                                                         <  2:231117/140‑1 (MQ=255)
                                            ccGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCg                                                                                         <  2:997666/140‑1 (MQ=255)
                                               cTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCa                                                                                      >  1:286896/1‑140 (MQ=255)
                                                   aaTCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAg                                                                                  <  1:1089773/140‑1 (MQ=255)
                                                    aTCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGa                                                                                 <  2:363088/140‑1 (MQ=255)
                                                     tCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGAc                                                                                >  2:908866/1‑140 (MQ=255)
                                                         tttACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGtt                                                                            <  2:639757/140‑1 (MQ=255)
                                                               tGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCa                                                                      <  1:1214554/140‑1 (MQ=255)
                                                                 cAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAg                                                                    <  2:490381/140‑1 (MQ=255)
                                                                 cAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAg                                                                    >  1:1166538/1‑140 (MQ=255)
                                                                 cAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAg                                                                    <  2:776840/140‑1 (MQ=255)
                                                                 cAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAg                                                                    <  2:63773/140‑1 (MQ=255)
                                                                 cAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAg                                                                    >  1:387042/1‑140 (MQ=255)
                                                                 cAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAg                                                                    <  2:482918/140‑1 (MQ=255)
                                                                 cAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAg                                                                    <  1:297053/140‑1 (MQ=255)
                                                                       cATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAg                                                                        >  1:402413/1‑130 (MQ=255)
                                                                       cATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAg                                                                        <  2:402413/130‑1 (MQ=255)
                                                                        aTCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCgg                                                             >  1:30905/1‑140 (MQ=255)
                                                                            gCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGAt                                                         <  2:190639/140‑1 (MQ=255)
                                                                                gtacgtTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGATCGCt                                                     >  1:393723/1‑140 (MQ=255)
                                                                                      tAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGATCGCTTCGACa                                               >  2:91515/1‑140 (MQ=255)
                                                                                       aaaGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGATCGCTTCGACAg                                              <  2:113918/140‑1 (MQ=255)
                                                                                       aaaGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGATCGCTTCGACAg                                              >  2:908876/1‑140 (MQ=255)
                                                                                         aGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGATCGCTTCGACAGaa                                            <  1:590143/140‑1 (MQ=255)
                                                                                         aGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGATCGCTTCGACAGaa                                            <  1:908876/140‑1 (MQ=255)
                                                                                         aGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGATCGCTTCGACAGaa                                            <  1:908866/140‑1 (MQ=255)
                                                                                                     tGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGATCGCTTCGACAGAACCCTGTACGTCt                                <  2:1166538/140‑1 (MQ=255)
                                                                                                            ggACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGATCGCTTCGACAGAACCCTGTACGTCTGCCTTCa                         >  1:151383/1‑140 (MQ=255)
                                                                                                             gACGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGATCGCTTCGACAGAACCCTGTACGTCTGCCTTCAg                        >  1:311224/1‑140 (MQ=255)
                                                                                                              aCGCCGCAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGATCGCTTCGACAGAACCCTGTACGTCTGCCTTCAgg                       <  1:576188/140‑1 (MQ=255)
                                                                                                               cgccgcAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGATCGCTTCGACAGAACCCTGTACGTCTGCCTTCAGGa                      <  2:286896/140‑1 (MQ=255)
                                                                                                                gccgcAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGATCGCTTCGACAGAACCCTGTACGTCTGCCTTCAGGAc                     <  2:393723/140‑1 (MQ=255)
                                                                                                                    cAGCCAGGGTGGCGTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGATCGCTTCGACAGAACCCTGTACGTCTGCCTTCAGGACGata                 >  2:694613/1‑140 (MQ=255)
                                                                                                                                 gTCGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGATCGCTTCGACAGAACCCTGTACGTCTGCCTTCAGGACGATATTCACTTCGTGaa    >  1:454752/1‑140 (MQ=255)
                                                                                                                                   cGGCTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGATCGCTTCGACAGAACCCTGTACGTCTGCCTTCAGGACGATATTCACTTCGTGAACt  <  1:338230/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                        
AATCAGGTTATAGATGACGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCTACGCCAGAACCGATGATCTTCACTTTAACTTCGTCAGTAGACAGTTTCAGCAAGGAGTCGGAGATCGCTTCGACAGAACCCTGTACGTCTGCCTTCAGGACGATATTCACTTCGTGAACT  >  NC_000913/3313690‑3313960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A