Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A16 F30 I1 R1 19 87.4 2945396 99.2% 2921832 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,536,050 G→T P179T (CCG→ACG)  ompR ← DNA‑binding transcriptional dual regulator OmpR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,536,0500GT98.7% 273.2 / ‑3.6 79P179T (CCG→ACG) ompRDNA‑binding transcriptional dual regulator OmpR
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base T (41/37);  total (41/38)
Fisher's exact test for biased strand distribution p-value = 4.81e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01

GTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGGCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGTTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTC  >  NC_000913/3535914‑3536185
                                                                                                                                        |                                                                                                                                       
gTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCTGAATATTCACGACCACTGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGtctc                                                                                                                                      >  1:431886/1‑140 (MQ=255)
 tCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCa                                                                                                                                     >  1:218127/1‑140 (MQ=255)
  cTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCAc                                                                                                                                    >  2:1266903/1‑140 (MQ=255)
  cTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCAc                                                                                                                                    >  1:172399/1‑140 (MQ=255)
     aaTGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCAcgcg                                                                                                                                 <  1:847271/140‑1 (MQ=255)
     aaTGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCAcgcg                                                                                                                                 <  1:512979/140‑1 (MQ=255)
       tGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGa                                                                                                                               <  1:1260093/140‑1 (MQ=255)
         tAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATg                                                                                                                             >  2:1031132/1‑140 (MQ=255)
          aaCGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATgg                                                                                                                            <  1:1031132/140‑1 (MQ=255)
          aaCGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATgg                                                                                                                            <  1:1266903/140‑1 (MQ=255)
           aCGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGc                                                                                                                           <  1:773845/140‑1 (MQ=255)
           aCGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGc                                                                                                                           >  2:1051398/1‑140 (MQ=255)
           aCGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGc                                                                                                                           <  1:523890/140‑1 (MQ=255)
            cgcgGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCAcgcg                                                                                                                                 <  1:604716/133‑1 (MQ=255)
            cgcgGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCAcgcg                                                                                                                                 >  2:604716/1‑133 (MQ=255)
              cgGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGa                                                                                                                        <  1:297003/140‑1 (MQ=255)
               ggATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGAc                                                                                                                       >  2:454956/1‑140 (MQ=255)
                gATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGAcc                                                                                                                      <  1:350905/140‑1 (MQ=255)
                 aTGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCa                                                                                                                     >  2:925431/1‑140 (MQ=255)
                 aTGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCa                                                                                                                     >  2:729095/1‑140 (MQ=255)
                 aTGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCa                                                                                                                     >  2:847646/1‑140 (MQ=255)
                 aTGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCa                                                                                                                     <  1:1471406/140‑1 (MQ=255)
                   gcgcTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGt                                                                                                                   <  2:1390166/140‑1 (MQ=255)
                   gcgcTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGt                                                                                                                   <  1:417995/140‑1 (MQ=255)
                        ggATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCTGAATATTCACGACCACTGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCtt                                                                                                              <  2:431886/140‑1 (MQ=255)
                        ggATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCtt                                                                                                              <  2:670806/140‑1 (MQ=255)
                              tcttcCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTAc                                                                                                        >  2:658952/1‑140 (MQ=255)
                               cttcCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTAcc                                                                                                       >  1:663789/1‑140 (MQ=255)
                                 tcCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGc                                                                                                     <  1:847646/140‑1 (MQ=255)
                                    accaTGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCaaa                                                                                                  <  1:1051398/140‑1 (MQ=255)
                                     ccaTGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAAc                                                                                                 >  2:466658/1‑140 (MQ=255)
                                        tGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCa                                                                                              >  2:1373789/1‑140 (MQ=255)
                                        tGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCa                                                                                              >  1:546704/1‑140 (MQ=255)
                                         gcggcgCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCAc                                                                                             >  1:1047692/1‑140 (MQ=255)
                                          cggcgCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCAcc                                                                                            >  1:456235/1‑140 (MQ=255)
                                              gcAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTg                                                                                        <  1:466658/140‑1 (MQ=255)
                                              gcAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTg                                                                                        <  1:714138/140‑1 (MQ=255)
                                                   cgcgAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAg                                                                                   <  1:454956/140‑1 (MQ=255)
                                                            tGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCgg                                                                          >  1:341190/1‑140 (MQ=255)
                                                              cACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGc                                                                               <  2:1080731/133‑1 (MQ=255)
                                                              cACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGc                                                                               >  1:1080731/1‑133 (MQ=255)
                                                              cACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCt                                                                        >  1:11487/1‑140 (MQ=255)
                                                                      tGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTcg                                                                >  1:1367164/1‑140 (MQ=255)
                                                                         aGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCgg                                                             <  2:341190/140‑1 (MQ=255)
                                                                         aGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCgg                                                             <  2:172399/140‑1 (MQ=255)
                                                                             ttCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACa                                                         >  1:819882/1‑140 (MQ=255)
                                                                             ttCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACa                                                         >  2:259711/1‑140 (MQ=255)
                                                                             ttCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACa                                                         >  2:164704/1‑140 (MQ=255)
                                                                             ttCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACa                                                         >  1:1303132/1‑140 (MQ=255)
                                                                             ttCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCCCCTTCGCGGAACa                                                         >  2:1176173/1‑140 (MQ=255)
                                                                               ccATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACAtt                                                       >  1:614184/1‑140 (MQ=255)
                                                                                     cGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCt                                                                   >  1:768806/1‑122 (MQ=255)
                                                                                     cGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCt                                                                   <  2:768806/122‑1 (MQ=255)
                                                                                          tatTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTAcc                                            <  2:1367164/140‑1 (MQ=255)
                                                                                          tatTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTAcc                                            <  1:1452544/140‑1 (MQ=255)
                                                                                               aCGTCCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGGCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGt                                       <  1:178934/140‑1 (MQ=255)
                                                                                               aCGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTTGCGCGTACCGAGGt                                       <  1:1373789/140‑1 (MQ=255)
                                                                                               aCGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGt                                       >  2:1113839/1‑140 (MQ=255)
                                                                                               aCGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGt                                       <  2:1047692/140‑1 (MQ=255)
                                                                                                    cACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGTTAAGt                                  >  1:1435223/1‑140 (MQ=255)
                                                                                                      cGGGCAAGGTTCATCAGCTTATCGCGGGGGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGTTAAGttt                                >  2:1349458/1‑140 (MQ=255)
                                                                                                      cGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGt                                       >  2:148138/1‑133 (MQ=255)
                                                                                                      cGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGt                                       <  1:148138/133‑1 (MQ=255)
                                                                                                      cGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGTTAAGttt                                >  1:176978/1‑140 (MQ=255)
                                                                                                      cGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGGTAAGttt                                >  2:850593/1‑140 (MQ=255)
                                                                                                      cGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGGTAAGttt                                >  1:535232/1‑140 (MQ=255)
                                                                                                      cGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCATCTTCGCGGAACATTTCGCGCGTACCGAGGTTAAGttt                                >  1:392585/1‑140 (MQ=255)
                                                                                                      cGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGGCGCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGGGAGCGGCATCGGCTCGTCATCCGCGAACATTTCTCGCGTTCCCGGGTTTAGgtt                                >  2:178934/1‑140 (MQ=255)
                                                                                                       gggCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGTTAAGTTTg                               <  2:1303132/140‑1 (MQ=255)
                                                                                                       gggCAAGGTTCATCAGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGTTAAGTTTg                               <  2:819882/140‑1 (MQ=255)
                                                                                                                  atcaGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGTTAAGTTTGAACTTACCGaa                    <  2:176978/140‑1 (MQ=255)
                                                                                                                    gaGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGTTAAGTTTGAACTTACCGAAAg                  <  1:173497/139‑1 (MQ=255)
                                                                                                                    caGCTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGTTAAGTTTGAACTTACCGAAAg                  <  1:925431/140‑1 (MQ=255)
                                                                                                                       cTTATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGTTAAGTTTGAACTTACCGAAAGCaa               >  2:668230/1‑140 (MQ=255)
                                                                                                                         tATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCCCCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGTTAAGTTTGAACTTACCGAAAGCAAtt             <  1:1322246/140‑1 (MQ=255)
                                                                                                                         tATCGCGGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGTTAAGTTTGAACTTACCGAAAGCAAtt             >  1:102570/1‑140 (MQ=255)
                                                                                                                            cgcgGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGTTAAGTTTGAACTTACCGAAAGCAATTAcc          >  1:755572/1‑140 (MQ=255)
                                                                                                                             gcgGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGTTAAGTTTGAACTTACCGAAAGCAATTACCg         <  2:456235/140‑1 (MQ=255)
                                                                                                                              cgGGAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGTTAAGTTTGAACTTACCGAAAGCAATTACCGc        <  1:850593/140‑1 (MQ=255)
                                                                                                                               gggAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAACCTCCCCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACTTTTCGCGCGTACCGAGGTTAAGTTTGAACTTACCGAAAGAAATTACCGcc       <  2:546704/140‑1 (MQ=255)
                                                                                                                                ggAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGGTAAGTTTGAACTTACCGAAAGCAATTACCGccc      >  2:564766/1‑139 (MQ=255)
                                                                                                                                ggAGAGCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGGCTTCGCGGGAAATTTCGCGCGTACCGAGGGTAAGGTTGAACTTACCGAAAGCAATTACccccc      >  2:173497/1‑139 (MQ=255)
                                                                                                                                    agCGTCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGTTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTc  <  1:1113839/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
GTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGGCTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGGTTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTC  >  NC_000913/3535914‑3536185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A