Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F30 I1 R1 19 57.1 1939578 99.3% 1926000 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,663,213 G→T G934W (GGG→TGG)  mdtF → multidrug efflux pump RND permease MdtF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,663,2130GT100.0% 238.0 / NA 68G934W (GGG→TGG) mdtFmultidrug efflux pump RND permease MdtF
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (36/32);  total (36/32)

AGCTGGTCAATTCCGTTCTCGGTGATGTTGGTTGTTCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCGGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGTTTACGCCCAATCCTGATGACCTCTCT  >  NC_000913/3663087‑3663346
                                                                                                                              |                                                                                                                                     
agCTGGTCAATTCCGTTCTCGGTGATGTTGGTTGTTCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCaa                                                                                                                          >  1:243646/1‑140 (MQ=255)
  cTGGTCAATTCCGTTCTCGGTGATGTTGGTTGTTCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCaaaa                                                                                                                        >  1:840712/1‑140 (MQ=255)
  cTGGTCAATTCCGTTCTCGGTGATGTTGGTTGTTCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCaaaa                                                                                                                        >  1:225648/1‑140 (MQ=255)
  cTGGTCAATTCCGTTCTCGGTGATGTTGGTTGTTCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTNTCCCNCnnaa                                                                                                                        >  2:950998/1‑140 (MQ=255)
    ggTCAATTCCGTTCTCGGTGCTGTTGGTTGTTCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAAc                                                                                                                      >  1:616485/1‑140 (MQ=255)
    ggTCAATTCCGTTCTCGGTGATGTTGGTTGTTCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAAc                                                                                                                      >  1:107173/1‑140 (MQ=255)
    ggTCAATTCCGTTCTCGGTGATGTTGGTTGTTCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAAc                                                                                                                      >  2:125594/1‑140 (MQ=255)
    ggTCAATTCCGTTCTCGGTGATGTTGGTTGTTCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAAc                                                                                                                      >  1:538934/1‑140 (MQ=255)
    ggTCAATTCCGTTCTCGGTGATGTTGGTTGTTCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAAc                                                                                                                      >  2:560039/1‑140 (MQ=255)
     gTCAATTCCGTTCTCGGTGATGTTGGTTGTTCCGTCAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACg                                                                                                                     >  1:932687/1‑140 (MQ=255)
     gTCAATTCCGTTCTCGGTGATGTTGGTTGTTCCGTCAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACg                                                                                                                     <  2:932687/140‑1 (MQ=255)
      tCAATTCCGTTCTCGGTGATGTTGGTTGTTCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGc                                                                                                                    <  1:559686/140‑1 (MQ=255)
           tCCGTTCTCGGTGATGTTGGTTGTTCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATcc                                                                                                               >  1:381492/1‑140 (MQ=255)
               ttCTCGGTGATGTTGGTTGTTCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCCTCCTGAt                                                                                                           >  1:663333/1‑140 (MQ=255)
               ttCTCGGTGATGTTGGTTGTTCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGAt                                                                                                           >  2:192840/1‑140 (MQ=255)
                   cGGTGATGTTGGTTGTTCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTc                                                                                                       <  2:22176/140‑1 (MQ=255)
                              gttgttCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGt                                                                                            <  1:575856/140‑1 (MQ=255)
                                tgttCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTg                                                                                          <  2:381492/140‑1 (MQ=255)
                                   tCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTgaga                                                                                       <  1:967033/140‑1 (MQ=255)
                                   tCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTgaga                                                                                       <  2:840712/140‑1 (MQ=255)
                                   tCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTgaga                                                                                       >  2:167610/1‑140 (MQ=255)
                                   tCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCC‑AAAACGCCATCCTGATTGTCGAATTTGCCGTTGAgat                                                                                      <  2:90361/140‑1 (MQ=255)
                                     cGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTgaga                                                                                       >  2:685536/1‑138 (MQ=255)
                                     cGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTgaga                                                                                       <  1:685536/138‑1 (MQ=255)
                                       ttAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAgatgat                                                                                   >  1:414140/1‑140 (MQ=255)
                                       ttAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAgatgat                                                                                   >  1:503513/1‑140 (MQ=255)
                                         aGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAgatg                                                                                     >  2:948850/1‑136 (MQ=255)
                                         aGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAgatg                                                                                     <  1:948850/136‑1 (MQ=255)
                                            cgtcgtTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCaga                                                                              <  2:503513/140‑1 (MQ=255)
                                            cgtcgtTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCaga                                                                              <  1:125594/140‑1 (MQ=255)
                                                 ttGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCagaaagaa                                                                         >  2:648847/1‑140 (MQ=255)
                                                    gcgcATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAggg                                                                      <  2:538934/140‑1 (MQ=255)
                                                        aTTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGGCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGaaaa                                                                  <  2:663333/140‑1 (MQ=255)
                                                             tGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCg                                                             <  1:903646/140‑1 (MQ=255)
                                                              ggCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGa                                                            <  2:573347/140‑1 (MQ=255)
                                                                    cGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAgg                                                      >  1:830404/1‑140 (MQ=255)
                                                                    cGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAgg                                                      >  1:352333/1‑140 (MQ=255)
                                                                    cGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAgg                                                      <  1:857311/140‑1 (MQ=255)
                                                                        cTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAat                                                  <  1:192840/140‑1 (MQ=255)
                                                                                cTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAg                                          >  2:508342/1‑140 (MQ=255)
                                                                                          gACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGAt                                >  1:856452/1‑140 (MQ=255)
                                                                                          gACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGAt                                <  2:352333/140‑1 (MQ=255)
                                                                                           aCGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATg                               <  1:218872/140‑1 (MQ=255)
                                                                                           aCGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATg                               >  2:630615/1‑140 (MQ=255)
                                                                                           aCGTCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATg                               >  2:185253/1‑140 (MQ=255)
                                                                                              tCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAgcg                                        <  2:884049/128‑1 (MQ=255)
                                                                                              tCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAgcg                                        >  1:884049/1‑128 (MQ=255)
                                                                                              tCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGt                            >  1:666977/1‑140 (MQ=255)
                                                                                              tCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGt                            >  2:14342/1‑140 (MQ=255)
                                                                                              tCTACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGt                            >  2:819240/1‑140 (MQ=255)
                                                                                                tACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGa                                            >  2:48769/1‑122 (MQ=255)
                                                                                                tACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGa                                            <  1:48769/122‑1 (MQ=255)
                                                                                                tACTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGttt                          <  1:508342/140‑1 (MQ=255)
                                                                                                tACTTCCAGATTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGttt                          <  2:685125/140‑1 (MQ=255)
                                                                                                  cTTCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGTTTAc                        >  1:134786/1‑140 (MQ=255)
                                                                                                   ttCCAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGTTTACg                       <  2:117669/140‑1 (MQ=255)
                                                                                                     ccAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGTTTACGcc                     <  1:185253/140‑1 (MQ=255)
                                                                                                      cAGGTTGGTTTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGTTTACGccc                    <  1:630615/140‑1 (MQ=255)
                                                                                                        ggttggttTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGTTTACGCCCaa                  <  2:243646/140‑1 (MQ=255)
                                                                                                        ggttggttTGCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGTTTACGCCCaa                  >  2:121/1‑140 (MQ=255)
                                                                                                                 gCTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGTTTACGCCCAATCCtgatga         <  2:107173/140‑1 (MQ=255)
                                                                                                                  cTGACCACCATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGTTTACGCCCAATCCTGATGAc        >  1:300238/1‑140 (MQ=255)
                                                                                                                     accaccATCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGTTTACGCCCAATCCTGATGACctc     >  2:141181/1‑140 (MQ=255)
                                                                                                                       caccaTCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGTTTACGCCCAATCCTGATGAc        <  1:480593/135‑1 (MQ=255)
                                                                                                                       caccaTCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGTTTACGCCCAATCCTGATGAc        >  2:480593/1‑135 (MQ=255)
                                                                                                                        accaTCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGTTTACGCCCAATCCTGATGACctctct  <  2:414140/140‑1 (MQ=255)
                                                                                                                          caTCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGTTTACGCCCAATCCTGATGACctctct  <  2:899269/138‑1 (MQ=255)
                                                                                                                          caTCTGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGTTTACGCCCAATCCTGATGACctctct  >  1:899269/1‑138 (MQ=255)
                                                                                                                              |                                                                                                                                     
AGCTGGTCAATTCCGTTCTCGGTGATGTTGGTTGTTCCGTTAGGCGTCGTTGGCGCATTACTGGCCACCGATCTGCGCGGCTTAAGTAATGACGTCTACTTCCAGGTTGGTTTGCTGACCACCATCGGGCTTTCCGCCAAAAACGCCATCCTGATTGTCGAATTTGCCGTTGAGATGATGCAGAAAGAAGGGAAAACGCCGATAGAGGCAATCATCGAAGCGGCGCGGATGCGTTTACGCCCAATCCTGATGACCTCTCT  >  NC_000913/3663087‑3663346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A