Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A27 F30 I1 R1 23 104.4 3531544 99.3% 3506823 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,059,453 Δ9 bp coding (1047‑1055/1824 nt) bipA → ribosome‑dependent GTPase, ribosome assembly factor

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4059453 4059461 9 120 [0] [0] 119 bipA ribosome‑dependent GTPase, ribosome assembly factor

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 40594520 (0.000)112 (1.120) 60/266 0.3 100% coding (1046/1824 nt) bipA ribosome‑dependent GTPase, ribosome assembly factor
?NC_000913 4059462 = 0 (0.000)coding (1056/1824 nt) bipA ribosome‑dependent GTPase, ribosome assembly factor

GATK/CNVnator alignment

N/A