Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F73 I1 R1 29 140.0 4785556 99.3% 4752057 139.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,100,766 C→A intergenic (‑38/+138) ansB ← / ← yggN L‑asparaginase 2/putative EcfF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,100,7660CA100.0% 632.4 / NA 175intergenic (‑38/+138)ansB/yggNL‑asparaginase 2/putative EcfF
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (68/107);  total (68/107)

Only 100 of 176 total aligned reads displayed.

CCGCCGGTTGCTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCCTTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAGTATTATGCCGTCTTAAAATA  >  NC_000913/3100631‑3100898
                                                                                                                                       |                                                                                                                                    
ccgccgGTTGCTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAg                                                                                                                                  <  1:939528/140‑1 (MQ=255)
ccgccgGTTGCTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAg                                                                                                                                  <  1:30217/140‑1 (MQ=255)
ccgccgGTTGCTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAg                                                                                                                                  >  1:604820/1‑140 (MQ=255)
ccgccgGTTGCTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAg                                                                                                                                  <  2:1336672/140‑1 (MQ=255)
  gccgGTTGCTAAAATTGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTTCGCATTATCCATTAGct                                                                                                                                <  1:913204/140‑1 (MQ=255)
  gccgGTTGCTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGct                                                                                                                                <  1:404770/140‑1 (MQ=255)
  gccgGTTGCTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGct                                                                                                                                <  2:1956720/140‑1 (MQ=255)
  gccgGTTGCTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGct                                                                                                                                <  1:537485/140‑1 (MQ=255)
  gccgGTTGCTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGct                                                                                                                                <  2:604820/140‑1 (MQ=255)
  gccgGTTGCTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGct                                                                                                                                <  1:634975/140‑1 (MQ=255)
  gccgGTTGCTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGct                                                                                                                                <  1:1838107/140‑1 (MQ=255)
        tGCTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTAt                                                                                                                          >  1:2319123/1‑140 (MQ=255)
           tAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATggg                                                                                                                       <  1:645047/140‑1 (MQ=255)
            aaaaTGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGa                                                                                                                      >  2:1725218/1‑140 (MQ=255)
                  gTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGct                                                                                                                                >  2:781468/1‑124 (MQ=255)
                  gTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGct                                                                                                                                <  1:781468/124‑1 (MQ=255)
                   tGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGa                                                                                                               <  2:1441196/140‑1 (MQ=255)
                           ggTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAAc                                                                                                       <  1:933281/140‑1 (MQ=255)
                           ggTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAAc                                                                                                       >  1:1044630/1‑140 (MQ=255)
                                tGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAAttt                                                                                                  >  2:1370146/1‑140 (MQ=255)
                                tGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAAttt                                                                                                  >  1:1971807/1‑140 (MQ=255)
                                  ccAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTAc                                                                                                >  1:379878/1‑140 (MQ=255)
                                  ccAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTAc                                                                                                <  1:2212236/140‑1 (MQ=255)
                                     aTGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGtt                                                                                                           <  2:2260982/126‑1 (MQ=255)
                                     aTGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGtt                                                                                                           >  1:2260982/1‑126 (MQ=255)
                                     aTGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAAc                                                                                             >  1:1093854/1‑140 (MQ=255)
                                      tgctgcACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACg                                                                                            >  2:1040366/1‑140 (MQ=255)
                                          gcACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGaa                                                                                        >  2:1171620/1‑140 (MQ=255)
                                           caccacTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAAc                                                                                                       >  1:1740573/1‑124 (MQ=255)
                                           caccacTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAAc                                                                                                       <  2:1740573/124‑1 (MQ=255)
                                           caccacTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAat                                                                                       >  2:1116327/1‑140 (MQ=255)
                                           caccacTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAat                                                                                       >  2:1674685/1‑140 (MQ=255)
                                           caccacTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAat                                                                                       <  2:52111/140‑1 (MQ=255)
                                                cTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACg                                                                                            >  1:1977363/1‑130 (MQ=255)
                                                cTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATAtt                                                                                  >  1:1537740/1‑140 (MQ=255)
                                                cTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATAtt                                                                                  >  1:2364285/1‑140 (MQ=255)
                                                 tAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAAc                                                                                             >  1:2233930/1‑128 (MQ=255)
                                                     aCCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAAc                                                                                             >  2:2343037/1‑124 (MQ=255)
                                                     aCCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAAc                                                                                             <  1:2343037/124‑1 (MQ=255)
                                                     aCCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGga                                                                             <  2:1413286/140‑1 (MQ=255)
                                                       ccATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGgaga                                                                           <  1:1398363/140‑1 (MQ=255)
                                                          tAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCt                                                                        >  1:2035500/1‑140 (MQ=255)
                                                           aaCCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTa                                                                       <  2:898586/140‑1 (MQ=255)
                                                           aaCCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTa                                                                       >  1:2266522/1‑140 (MQ=255)
                                                             ccAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACa                                                                     <  1:1495500/140‑1 (MQ=255)
                                                             ccAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACa                                                                     <  2:545380/140‑1 (MQ=255)
                                                             ccAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACa                                                                     <  1:1817553/140‑1 (MQ=255)
                                                             ccAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACa                                                                     <  2:379878/140‑1 (MQ=255)
                                                             ccAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACa                                                                     <  1:1586060/140‑1 (MQ=255)
                                                             ccAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACa                                                                     <  1:1674685/140‑1 (MQ=255)
                                                             ccAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTACGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACa                                                                     <  2:650173/140‑1 (MQ=255)
                                                                 tGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGga                                                                             >  1:245496/1‑128 (MQ=255)
                                                                 tGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGga                                                                             <  2:245496/128‑1 (MQ=255)
                                                                 tGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGt                                                                 >  2:201651/1‑140 (MQ=255)
                                                                 tGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGt                                                                 >  2:275128/1‑140 (MQ=255)
                                                                 tGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGt                                                                 >  1:1374516/1‑140 (MQ=255)
                                                                 tGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGt                                                                 >  2:1950171/1‑140 (MQ=255)
                                                                 tGCGGCAAGTGCAGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGt                                                                 >  2:2279599/1‑140 (MQ=255)
                                                                      cAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTagag                                                            <  2:2364285/140‑1 (MQ=255)
                                                                       aaGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAgg                                                           <  1:102648/140‑1 (MQ=255)
                                                                         gTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCa                                                         <  2:1592509/140‑1 (MQ=255)
                                                                                cTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACa                                                  <  2:338115/140‑1 (MQ=255)
                                                                                cTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACa                                                  <  2:312898/140‑1 (MQ=255)
                                                                                     tGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACg                                             <  1:1773576/140‑1 (MQ=255)
                                                                                     tGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACg                                             <  1:1345354/140‑1 (MQ=255)
                                                                                     tGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACg                                             <  1:1802638/140‑1 (MQ=255)
                                                                                     tGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACg                                             <  1:1171620/140‑1 (MQ=255)
                                                                                       aaaaaCTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACgaa                                           <  1:160559/140‑1 (MQ=255)
                                                                                       aaaaaCTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACgaa                                           <  1:68638/140‑1 (MQ=255)
                                                                                         aaaCTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACgaaga                                         >  2:1148468/1‑140 (MQ=255)
                                                                                          aaCTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACgaagaa                                        <  1:114229/140‑1 (MQ=255)
                                                                                               cATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTaaa                                   <  2:1483495/140‑1 (MQ=255)
                                                                                               cATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTaaa                                   <  2:1820263/140‑1 (MQ=255)
                                                                                               cATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTaaa                                   <  2:1882450/140‑1 (MQ=255)
                                                                                               cATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTaaa                                   <  1:1026032/140‑1 (MQ=255)
                                                                                               cATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGCTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTaaa                                   <  1:177627/140‑1 (MQ=255)
                                                                                                    cATTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCa                              <  1:1284722/140‑1 (MQ=255)
                                                                                                     aTTCCTCCAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCAt                             <  2:1778646/140‑1 (MQ=255)
                                                                                                       tcctccAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATaa                           >  1:1035110/1‑140 (MQ=255)
                                                                                                         ctccAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATaaaa                         <  2:2113169/140‑1 (MQ=255)
                                                                                                         ctccAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATaaaa                         <  1:371020/140‑1 (MQ=255)
                                                                                                         ctccAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATaaaa                         <  2:1365427/140‑1 (MQ=255)
                                                                                                         ctccAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATaaaa                         <  1:1476851/140‑1 (MQ=255)
                                                                                                         ctccAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATaaaa                         <  2:2262789/140‑1 (MQ=255)
                                                                                                          tccAGTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATaaaaa                        <  1:1280503/140‑1 (MQ=255)
                                                                                                            cAGTTACGTGAACGCTACGCGTTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAg                      >  2:475876/1‑140 (MQ=255)
                                                                                                              gTTACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAATTTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAGta                    >  2:531218/1‑140 (MQ=255)
                                                                                                                tACGTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAGtatt                  >  1:1432164/1‑140 (MQ=255)
                                                                                                                   gTGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAGTATTATg               >  2:363835/1‑140 (MQ=255)
                                                                                                                    tGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAGTATTATGc              <  2:2319123/140‑1 (MQ=255)
                                                                                                                    tGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAGTATTATGc              <  1:107686/140‑1 (MQ=255)
                                                                                                                    tGAACGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAGTATTATGc              <  2:1537740/140‑1 (MQ=255)
                                                                                                                      aaCGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAGTATTTTGCCg            <  1:201651/140‑1 (MQ=255)
                                                                                                                      aaCGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAGTATTATGCCg            >  2:476135/1‑140 (MQ=255)
                                                                                                                        cGCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAGTATTATGCCGTc          >  1:1314313/1‑140 (MQ=255)
                                                                                                                         gCTACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAGTATTATGCCGTCt         <  1:2317381/140‑1 (MQ=255)
                                                                                                                           tACGCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAGTATTATGCCGTCTTa       <  1:275128/140‑1 (MQ=255)
                                                                                                                              gCATTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAGTATTATGCCGTCTTaaaa    <  2:1286483/140‑1 (MQ=255)
                                                                                                                                aTTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAGTATTATGCCGTCTTAAAATa  <  1:158437/140‑1 (MQ=255)
                                                                                                                                aTTATCCATTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAGTATTATGCCGTCTTAAAATa  <  1:1885359/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                    
CCGCCGGTTGCTAAAATGGTGATATTGGGTAATGCCAATGCTGCACCACTAAAACCCATAACCAGTGCGGCAAGTGCCGTCTTTTTGAAAAACTCCATTTCATTCCTCCAGTTACGTGAACGCTACGCATTATCCCTTAGCTCTGTATGGGAAATTTGACGTTAAACAATTTACAACGTGAATATATTTTGGAGATCTACAAAGTTAGAGGCAGGTAACAAAACGAAGAATTAAACGGCATAAAAAAGTATTATGCCGTCTTAAAATA  >  NC_000913/3100631‑3100898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A