mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 513,935 | (A)7→8 | intergenic (+67/‑58) | ybaT → / → cueR | putative transporter YbaT/DNA‑binding transcriptional dual regulator CueR |
| RA | 550,189 | C→A | A188E (GCG→GAG) | ylbF → | DUF2877 domain‑containing protein YlbF |
| RA | 871,543 | C→A | R193S (CGC→AGC) | gsiC → | glutathione ABC transporter membrane subunit GsiC |
| RA | 886,888 | G→T | T151K (ACG→AAG) | ybjJ ← | inner membrane protein YbjJ |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,077,913 | G→T | P324T (CCG→ACG) | putA ← | fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA |
| RA | 1,103,150 | A→G | I16T (ATC→ACC) | csgD ← | DNA‑binding transcriptional dual regulator CsgD |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,624,927 | G→A | L628L (CTG→CTA) | ppk → | polyphosphate kinase |
| RA | 2,731,130 | T→C | noncoding (28/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 3,067,537 | G→T | P182T (CCG→ACG) | yggE ← | uncharacterized protein YggE |
| RA | 3,100,766 | C→A | intergenic (‑38/+138) | ansB ← / ← yggN | L‑asparaginase 2/putative EcfF |
| RA | 3,223,159 | G→T | R176L (CGC→CTC) | ebgA → | evolved beta‑D‑galactosidase subunit alpha |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,608,061 | C→A | S537R (AGC→AGA) | zntA → | Zn(2(+))/Cd(2(+))/Pb(2(+)) exporting P‑type ATPase |
| RA | 3,696,083 | C→A | D35Y (GAT→TAT) | yhjR ← | PF10945 family protein YhjR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,935,539 | C→A | G84G (GGC→GGA) | rbsC → | ribose ABC transporter membrane subunit |
| RA | 4,202,066 | G→A | Q47Q (CAG→CAA) | zraS → | sensory histidine kinase ZraS |
| RA | 4,222,600 | G→T | intergenic (‑113/+204) | arpA ← / ← iclR | regulator of acetyl CoA synthetase/DNA‑binding transcriptional repressor IclR |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,412,516 | C→A | L44I (CTA→ATA) | yjfM → | DUF1190 domain‑containing protein YjfM |
| RA | 4,552,043 | C→A | F136L (TTC→TTA) | uxuA → | D‑mannonate dehydratase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102942 | 3104055 | 1114 | 38 [37] | [37] 39 | [mutY] | [mutY] |
| * | * | ÷ | NC_000913 | 3423751–3424234 | 3424545–3424238 | 5–795 | 38 [36] | [35] 41 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 113 (0.800) | 75 (0.600) | 54/244 | 0.6 | 42.8% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 101 (0.810) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 113 (0.800) | 38 (0.300) | 32/244 | 2.0 | 27.5% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 101 (0.810) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 204 (1.490) | 96/268 | 0.0 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 160 (1.130) | 197 (1.410) | 80/274 | 0.2 | 70.6% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 5 (0.040) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 183 (1.300) | 84/276 | 0.1 | 97.9% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 4 (0.030) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||