Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F73 I1 R1	23	85.6	2911730	99.3%	2891347	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,582,868	G→T	D336Y (GAT→TAT)	yhhZ →	putative endonuclease YhhZ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,582,868	0	G	T	99.1%	375.6 / ‑3.2	108	D336Y (GAT→TAT)	yhhZ	putative endonuclease YhhZ
Reads supporting (aligned to +/- strand): ref base G (0/1); new base T (48/58); total (49/59)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01

Only 100 of 108 total aligned reads displayed.

ACTTGCAAAAACCTCCGAAGCATCTGGAAGATTCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATGATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCTGGCTCA  >  NC_000913/3582741‑3582999

aCTTGCAAAAACCTCCGAAGCATCTGGAAGATTCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAAtt                                                                                                                         <  2:44271/140‑1 (MQ=255)

      aaaaaCCTCCGAAGCATCTGGAAGATTCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTAt                                                                                                                   <  2:102033/140‑1 (MQ=255)

            cTCCGAAGCATCTGGAAGATTCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCg                                                                                                             <  2:135069/140‑1 (MQ=255)

               cGAAGCATCTGGAAGATTCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGaaa                                                                                                          >  1:1307406/1‑140 (MQ=255)

                gAAGCATCTGGAAGATTCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGaaaa                                                                                                         <  2:97106/140‑1 (MQ=255)

                gAAGCATCTGGAAGATTCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGaaaa                                                                                                         <  2:92325/140‑1 (MQ=255)

                  aGCATCTGGAAGATTCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACg                                                                                                       <  1:514255/140‑1 (MQ=255)

                      tCTGGAAGATTCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAAcc                                                                                                   >  2:690381/1‑140 (MQ=255)

                       cTGGAAGATTCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCa                                                                                                  <  2:583467/140‑1 (MQ=255)

                       cTGGAAGATTCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCa                                                                                                  <  1:1119333/140‑1 (MQ=255)

                        tGGAAGATTCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCat                                                                                                 <  2:587902/140‑1 (MQ=255)

                              aTTCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGaa                                                                                                     <  2:467159/130‑1 (MQ=255)

                              aTTCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGaa                                                                                                     >  1:467159/1‑130 (MQ=255)

                              aTTCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACTATATCATa                                                                                           >  1:196991/1‑140 (MQ=255)

                               ttCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATaa                                                                                          <  2:393674/140‑1 (MQ=255)

                               ttCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATaa                                                                                          >  1:1018005/1‑140 (MQ=255)

                               ttCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATaa                                                                                          >  1:1424445/1‑140 (MQ=255)

                                tCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATaaa                                                                                         >  2:862702/1‑140 (MQ=255)

                                 cAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAg                                                                                        <  1:234079/140‑1 (MQ=255)

                                  aaCGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGaa                                                                                                     >  1:538749/1‑126 (MQ=255)

                                  aaCGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGaa                                                                                                     <  2:538749/126‑1 (MQ=255)

                                    cGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGttt                                                                                     >  2:95674/1‑140 (MQ=255)

                                       cGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTa                                                                                  <  1:837764/140‑1 (MQ=255)

                                       cGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTa                                                                                  >  1:742879/1‑140 (MQ=255)

                                         aaGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACt                                                                                >  2:1426175/1‑140 (MQ=255)

                                               ttttAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATg                                                                          <  1:659163/140‑1 (MQ=255)

                                               ttttAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATg                                                                          <  1:521481/140‑1 (MQ=255)

                                               ttttAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATg                                                                          <  1:343804/140‑1 (MQ=255)

                                                       aTGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACg                                                                  >  2:237640/1‑140 (MQ=255)

                                                        tGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGa                                                                 >  2:1205837/1‑140 (MQ=255)

                                                        tGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGa                                                                 >  2:208672/1‑140 (MQ=255)

                                                        tGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGa                                                                 >  1:3006/1‑140 (MQ=255)

                                                         gagaAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGaa                                                                <  1:1294307/140‑1 (MQ=255)

                                                         gagaAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGaa                                                                <  1:1426175/140‑1 (MQ=255)

                                                         gagaAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGaa                                                                <  1:621886/140‑1 (MQ=255)

                                                          agaAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAAt                                                               >  2:1046012/1‑140 (MQ=255)

                                                              aGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCt                                                           <  1:1310523/140‑1 (MQ=255)

                                                               gggCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTa                                                          <  2:1043529/140‑1 (MQ=255)

                                                                ggCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGa                                                                 >  1:807606/1‑132 (MQ=255)

                                                                ggCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGa                                                                 <  2:807606/132‑1 (MQ=255)

                                                                ggCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTaa                                                         >  2:313322/1‑140 (MQ=255)

                                                                ggCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTaa                                                         <  2:1018005/140‑1 (MQ=255)

                                                                ggCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTaa                                                         >  2:1297120/1‑140 (MQ=255)

                                                                ggCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTaa                                                         >  1:1385563/1‑140 (MQ=255)

                                                                ggCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTaa                                                         <  2:1424445/140‑1 (MQ=255)

                                                                ggCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTaa                                                         <  2:742879/140‑1 (MQ=255)

                                                                ggCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTaa                                                         <  2:3006/140‑1 (MQ=255)

                                                                 gCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAg                                                        <  2:1292693/140‑1 (MQ=255)

                                                                  cAATGTTCCTCTAAACTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAgg                                                       <  2:607071/140‑1 (MQ=255)

                                                                     tGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGaa                                                    >  2:471508/1‑140 (MQ=255)

                                                                      gTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAat                                                   <  1:95674/140‑1 (MQ=255)

                                                                      gTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAat                                                   <  2:1110061/140‑1 (MQ=255)

                                                                          ctctAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAat                                                   <  1:1238826/136‑1 (MQ=255)

                                                                          ctctAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAat                                                   >  2:1238826/1‑136 (MQ=255)

                                                                           tctAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATtag                                              >  2:638494/1‑140 (MQ=255)

                                                                                  tataATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGa                                       <  2:1385563/140‑1 (MQ=255)

                                                                                         ttCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCaaa                                >  2:547346/1‑140 (MQ=255)

                                                                                         ttCACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCaaa                                >  2:1381257/1‑140 (MQ=255)

                                                                                           cACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAAt                              >  1:125577/1‑140 (MQ=255)

                                                                                           cACCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAAt                              <  1:690381/140‑1 (MQ=255)

                                                                                            aCCATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACTATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATc                             <  2:196991/140‑1 (MQ=255)

                                                                                            aCCATAAACTATCTCTAGATGATGGTGGTACTAAT‑ATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCa                            >  2:592549/1‑140 (MQ=255)

                                                                                             ccATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCa                            <  2:417382/140‑1 (MQ=255)

                                                                                             ccATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCa                            <  1:588148/140‑1 (MQ=255)

                                                                                             ccATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCa                            <  1:471508/140‑1 (MQ=255)

                                                                                             ccATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCa                            <  1:1046012/140‑1 (MQ=255)

                                                                                             ccATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCa                            <  2:850342/140‑1 (MQ=255)

                                                                                             ccATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCa                            <  1:242101/140‑1 (MQ=255)

                                                                                             ccATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCa                            <  1:237640/140‑1 (MQ=255)

                                                                                              cATAAACTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCAc                           >  2:78078/1‑140 (MQ=255)

                                                                                                 aaaCTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTcc                        <  2:504255/140‑1 (MQ=255)

                                                                                                 aaaCTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTcc                        <  1:1240052/140‑1 (MQ=255)

                                                                                                   aCTATCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCt                      <  1:1205837/140‑1 (MQ=255)

                                                                                                      aTCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTggg                   >  1:970184/1‑140 (MQ=255)

                                                                                                      aTCTCTAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTggg                   <  1:547346/140‑1 (MQ=255)

                                                                                                        ctctAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAGTCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGcc                 >  1:1398276/1‑140 (MQ=255)

                                                                                                        ctctAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGcc                 >  1:1009634/1‑140 (MQ=255)

                                                                                                        ctctAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGcc                 >  1:914467/1‑140 (MQ=255)

                                                                                                         tctAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCa                <  1:862702/140‑1 (MQ=255)

                                                                                                           tAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTccc                       <  1:838811/131‑1 (MQ=255)

                                                                                                           tAGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTccc                       >  2:838811/1‑131 (MQ=255)

                                                                                                            aGATGATGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTc             >  1:1039908/1‑140 (MQ=255)

                                                                                                             gatgatGGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTcc            >  2:697464/1‑140 (MQ=255)

                                                                                                                 atgGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCt        >  1:1370707/1‑140 (MQ=255)

                                                                                                                 atgGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCt        >  2:1189693/1‑140 (MQ=255)

                                                                                                                 atgGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCt        >  2:1229244/1‑140 (MQ=255)

                                                                                                                 atgGTGGTACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCt        >  2:1458/1‑140 (MQ=255)

                                                                                                                   ggtggtACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCTgg      >  1:881400/1‑140 (MQ=255)

                                                                                                                   ggtggtACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCTgg      >  1:401374/1‑140 (MQ=255)

                                                                                                                   ggtggtACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCTgg      <  1:1229244/140‑1 (MQ=255)

                                                                                                                   ggtggtACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCTgg      >  2:867587/1‑140 (MQ=255)

                                                                                                                   ggtggtACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCTgg      >  1:507159/1‑140 (MQ=255)

                                                                                                                    gtggtACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCTGGc     <  2:1307406/140‑1 (MQ=255)

                                                                                                                    gtggtACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCTGGc     <  2:125577/140‑1 (MQ=255)

                                                                                                                     tggtACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCTGGCt    <  1:1381257/140‑1 (MQ=255)

                                                                                                                     tggtACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCTGGCt    >  2:1420433/1‑140 (MQ=255)

                                                                                                                     tggtACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCTGGCt    >  2:1066091/1‑140 (MQ=255)

                                                                                                                     tggtACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCTGGCt    >  2:1173380/1‑140 (MQ=255)

                                                                                                                       gtACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCTGGCTCa  <  1:388766/140‑1 (MQ=255)

                                                                                                                       gtACTAATTATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCTGGCTCa  >  1:793646/1‑140 (MQ=255)

ACTTGCAAAAACCTCCGAAGCATCTGGAAGATTCAACGCCGAAGACCTTTTAAGAATGAGAAAGGGCAATGTTCCTCTAAATTATAATGTTCACCATAAACTATCTCTAGATGATGGTGGTACTAATGATTTCGAAAATTTAGTATTAATCGAAAACGAACCATATCATAAAGTTTTTACTAACATGCAATCACGAATAGCTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCTGGCTCA  >  NC_000913/3582741‑3582999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A