Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F73 I1 R1 29 53.4 1802238 99.2% 1787820 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,008,155 C→A Q216K (CAA→AAA)  ygeX → 2,3‑diaminopropionate ammonia‑lyase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,008,1550CA100.0% 224.8 / NA 65Q216K (CAA→AAA) ygeX2,3‑diaminopropionate ammonia‑lyase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (36/29);  total (36/29)

CCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAA  >  NC_000913/3008021‑3008286
                                                                                                                                      |                                                                                                                                   
ccGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATg                                                                                                                                >  1:462095/1‑140 (MQ=255)
ccGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATg                                                                                                                                >  2:448226/1‑140 (MQ=255)
  gTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATACg                                                                                                                              >  1:608780/1‑140 (MQ=255)
   ttCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGt                                                                                                                             >  1:764209/1‑140 (MQ=255)
      gCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGaa                                                                                                                          >  2:486926/1‑140 (MQ=255)
      gCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGaa                                                                                                                          >  1:699010/1‑140 (MQ=255)
       ccTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGaaa                                                                                                                         <  1:727606/140‑1 (MQ=255)
       ccTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGaaa                                                                                                                         <  1:337045/140‑1 (MQ=255)
        cTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAAt                                                                                                                        >  1:722349/1‑140 (MQ=255)
              aTGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGt                                                                                                                  >  2:53182/1‑140 (MQ=255)
               tGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTa                                                                                                                 >  1:714199/1‑140 (MQ=255)
                    cacGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAAcccc                                                                                                            <  1:292345/140‑1 (MQ=255)
                    cacGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAAcccc                                                                                                            <  2:801182/140‑1 (MQ=255)
                     acGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCg                                                                                                           >  2:156700/1‑140 (MQ=255)
                       gcgcAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGAc                                                                                                         >  2:438719/1‑140 (MQ=255)
                                       gggAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCaa                                                                                         >  2:583917/1‑140 (MQ=255)
                                         gAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGc                                                                                       <  1:556383/140‑1 (MQ=255)
                                          aaGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGcc                                                                                      <  2:836102/140‑1 (MQ=255)
                                           aGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCg                                                                                     <  1:226928/140‑1 (MQ=255)
                                             tGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGgt                                                                                   >  1:719247/1‑140 (MQ=255)
                                               gTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGgtgt                                                                                 >  2:204355/1‑140 (MQ=255)
                                               gTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGgtgt                                                                                 >  2:878861/1‑140 (MQ=255)
                                                    ggACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAg                                                                            <  2:388170/140‑1 (MQ=255)
                                                      acacGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCa                                                                          <  1:67796/140‑1 (MQ=255)
                                                       cacGGCATGGGAAGGTTACACCAAAAT‑CCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAAt                                                                        >  1:132345/1‑140 (MQ=255)
                                                        acGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAAt                                                                        >  1:740019/1‑140 (MQ=255)
                                                          ggCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATgg                                                                      >  1:514636/1‑140 (MQ=255)
                                                           gCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGc                                                                     <  1:184543/140‑1 (MQ=255)
                                                           gCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGc                                                                     <  1:448226/140‑1 (MQ=255)
                                                               gggAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCggt                                                                 >  1:548291/1‑140 (MQ=255)
                                                               gggAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCggt                                                                 >  2:429515/1‑140 (MQ=255)
                                                                ggAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCTGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCggtg                                                                <  2:617228/140‑1 (MQ=255)
                                                                  aaGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCggtggt                                                              <  1:131830/140‑1 (MQ=255)
                                                                     gTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGtgtg                                                           >  1:457057/1‑140 (MQ=255)
                                                                               aaTCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATc                                                 >  2:600711/1‑140 (MQ=255)
                                                                               aaTCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATc                                                 >  1:345130/1‑140 (MQ=255)
                                                                                aTCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCt                                                >  2:835333/1‑140 (MQ=255)
                                                                                    cAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTc                                            <  1:72231/140‑1 (MQ=255)
                                                                                    cAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTc                                            <  1:775015/140‑1 (MQ=255)
                                                                                          ggATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTc                                      >  2:766379/1‑140 (MQ=255)
                                                                                            aTCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCta                                    >  2:6449/1‑140 (MQ=255)
                                                                                               aTGCAAGGCTACGCAAGCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAg                                 >  2:794583/1‑140 (MQ=255)
                                                                                               aTGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAg                                 <  1:156700/140‑1 (MQ=255)
                                                                                                tGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGa                                          >  1:476067/1‑130 (MQ=255)
                                                                                                tGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGa                                          <  2:476067/130‑1 (MQ=255)
                                                                                                tGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGc                                >  2:525684/1‑140 (MQ=255)
                                                                                                tGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGc                                >  1:425165/1‑140 (MQ=255)
                                                                                                tGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGc                                >  2:867190/1‑140 (MQ=255)
                                                                                                  cAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGccc                              >  1:499829/1‑140 (MQ=255)
                                                                                                    aGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGc                            <  1:486926/140‑1 (MQ=255)
                                                                                                     ggCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCa                           >  1:610990/1‑140 (MQ=255)
                                                                                                     ggCTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCa                           >  1:379125/1‑140 (MQ=255)
                                                                                                       cTACGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCaaa                         <  2:714199/140‑1 (MQ=255)
                                                                                                         aCGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAAt                       <  1:867190/140‑1 (MQ=255)
                                                                                                          cGCAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATc                      >  2:441857/1‑140 (MQ=255)
                                                                                                            cAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTg                    <  2:514636/140‑1 (MQ=255)
                                                                                                            cAACCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTg                    <  2:610990/140‑1 (MQ=255)
                                                                                                              aCCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGca                  <  2:457057/140‑1 (MQ=255)
                                                                                                              aCCCTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGca                  <  2:722349/140‑1 (MQ=255)
                                                                                                               cccTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGcac                 <  1:212674/140‑1 (MQ=255)
                                                                                                               cccTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGcac                 >  2:737861/1‑140 (MQ=255)
                                                                                                                 cTGGCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAg               <  2:56863/140‑1 (MQ=255)
                                                                                                                    gCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCat            <  1:53182/140‑1 (MQ=255)
                                                                                                                    gCAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCat            <  1:6449/140‑1 (MQ=255)
                                                                                                                     cAGATGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCatt           <  1:766379/140‑1 (MQ=255)
                                                                                                                         tGAAGCCGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTAttg       >  1:7293/1‑140 (MQ=255)
                                                                                                                              ccGTCGAGAAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGaa  <  1:429515/140‑1 (MQ=255)
                                                                                                                              ccGTCGAGAAAATGCGTGAAATGGACGTAAGCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACATCATTATTGTTGaa  >  2:660577/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                   
CCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAGCAATGGCCGGTGGTGTGCTGGGTTATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAA  >  NC_000913/3008021‑3008286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A