Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F73 I1 R1
|
29 |
84.2 |
2875838 |
99.2% |
2852831 |
138.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,039,191 |
C→A |
T79N (ACT→AAT) |
yedX → |
hydroxyisourate hydrolase/transthyretin‑related protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,039,191 | 0 | C | A | 98.9%
| 320.0
/ ‑3.4
| 93 | T79N (ACT→AAT) | yedX | hydroxyisourate hydrolase/transthyretin‑related protein |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (43/49); total (43/50) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 |
TTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCATTATCATGTGCCT > NC_000913/2039054‑2039324
|
tttGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATg > 2:473284/1‑140 (MQ=255)
tttGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATg > 2:521736/1‑140 (MQ=255)
ttGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGc < 2:408113/140‑1 (MQ=255)
aaCCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAAc > 1:767375/1‑140 (MQ=255)
aGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACg < 1:473284/140‑1 (MQ=255)
cAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTa < 1:229223/136‑1 (MQ=255)
cAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTa > 2:229223/1‑136 (MQ=255)
cAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACggg > 1:135186/1‑140 (MQ=255)
aaaCAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGc < 1:1171598/140‑1 (MQ=255)
aCAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGa < 2:1080774/140‑1 (MQ=255)
aCAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGa < 1:1367836/140‑1 (MQ=255)
aaaaCCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGTGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTAcc < 1:1371353/140‑1 (MQ=255)
aaaCCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTAc < 1:54773/128‑1 (MQ=255)
aaaCCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTAc > 2:54773/1‑128 (MQ=255)
aaCCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCgt > 2:5448/1‑140 (MQ=255)
aaCCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCgt > 2:125500/1‑140 (MQ=255)
aCCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCgtg < 2:530661/140‑1 (MQ=255)
aCCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCgtg < 1:241457/140‑1 (MQ=255)
ccGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTc < 1:75222/140‑1 (MQ=255)
ccGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTc < 2:460470/140‑1 (MQ=255)
tgctgACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTAt > 2:112486/1‑140 (MQ=255)
tgctgACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTAt > 1:577487/1‑140 (MQ=255)
tgACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTa < 2:1071114/140‑1 (MQ=255)
tgACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTa < 2:503952/140‑1 (MQ=255)
gACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTaa > 2:1101102/1‑140 (MQ=255)
aCAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCgg < 1:939912/140‑1 (MQ=255)
aGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGGTAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCgggg > 2:108720/1‑140 (MQ=255)
aGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCgggg > 1:491390/1‑140 (MQ=255)
gTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGa < 2:577487/140‑1 (MQ=255)
ctctTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTAt > 2:1226324/1‑140 (MQ=255)
tGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCa < 2:491390/140‑1 (MQ=255)
gAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCaa < 2:794279/140‑1 (MQ=255)
aagGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACa > 2:1194499/1‑140 (MQ=255)
aagGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACa > 2:906282/1‑140 (MQ=255)
ggCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACaaa > 1:956730/1‑140 (MQ=255)
ggCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGAAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACaaa > 2:1169933/1‑140 (MQ=255)
cGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAAt > 2:655655/1‑140 (MQ=255)
cTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGtt > 2:462789/1‑140 (MQ=255)
tGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGttt < 1:1167308/140‑1 (MQ=255)
tGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGttt < 1:112486/140‑1 (MQ=255)
gTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTttct > 1:1277018/1‑140 (MQ=255)
gTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTttct > 2:1043422/1‑140 (MQ=255)
cTTAATACCGCCAAAACAGATAATGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTga < 2:426388/140‑1 (MQ=255)
aaTACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTttc > 2:1304383/1‑129 (MQ=255)
aaTACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTttc < 1:1304383/129‑1 (MQ=255)
aaTACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGAt > 2:740093/1‑140 (MQ=255)
cGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCg < 1:1043422/140‑1 (MQ=255)
cGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCg > 1:116930/1‑140 (MQ=255)
ccAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCTGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGtt > 1:989648/1‑140 (MQ=255)
ccAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGtt > 1:622683/1‑140 (MQ=255)
ccAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGtt > 2:1212817/1‑140 (MQ=255)
ccAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGtt < 2:116930/140‑1 (MQ=255)
aaCAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAAt < 2:135186/140‑1 (MQ=255)
aaCAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTAGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAAt < 1:906282/140‑1 (MQ=255)
gATAAGGATGGACGAATTAAGGCACTGTGGCCTGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCa < 2:989648/140‑1 (MQ=255)
gATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCa < 2:359133/140‑1 (MQ=255)
gATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAAttt > 2:767351/1‑138 (MQ=255)
gATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAAttt < 1:767351/138‑1 (MQ=255)
gATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCa < 1:111113/140‑1 (MQ=255)
gATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCa > 1:1142575/1‑140 (MQ=255)
gATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCa < 2:622683/140‑1 (MQ=255)
gATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCa < 2:956730/140‑1 (MQ=255)
gATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATtaa < 2:1277018/140‑1 (MQ=255)
gATGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATtaa < 1:141621/140‑1 (MQ=255)
tGGACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATtaata > 1:995877/1‑140 (MQ=255)
gACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATaaa > 2:697968/1‑140 (MQ=255)
gACGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATaaa < 1:740093/140‑1 (MQ=255)
aCGAATTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAg > 1:643242/1‑140 (MQ=255)
aaTTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGa < 1:848262/140‑1 (MQ=255)
aaTTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGa < 2:860719/140‑1 (MQ=255)
aTTAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGaa < 1:521736/140‑1 (MQ=255)
ttAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAAc < 1:569149/140‑1 (MQ=255)
ttAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAAc < 1:462789/140‑1 (MQ=255)
ttAAGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAAc > 1:988506/1‑140 (MQ=255)
aaGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGa < 2:303986/140‑1 (MQ=255)
aGGCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAg < 1:108720/140‑1 (MQ=255)
ggCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGc > 1:637290/1‑140 (MQ=255)
gCACTGTGGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCa < 2:995877/140‑1 (MQ=255)
tgtgGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGa > 2:1405240/1‑133 (MQ=255)
tgtgGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGa < 1:1405240/133‑1 (MQ=255)
tgtgGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCa < 2:909073/136‑1 (MQ=255)
tgtgGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCa > 1:909073/1‑136 (MQ=255)
tgGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCATTATCa > 2:620834/1‑140 (MQ=255)
tgGCCCGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCATTATCa > 1:876090/1‑140 (MQ=255)
cccGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCATTATCAtgt < 1:125500/140‑1 (MQ=255)
cccGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCATTATCAtgt < 2:637290/140‑1 (MQ=255)
ccGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCATTATCAtgtg > 1:827459/1‑140 (MQ=255)
cGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCATTATCATGTGc < 1:1212817/140‑1 (MQ=255)
cGAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCATTATCATGTGc < 1:1035736/140‑1 (MQ=255)
gAGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCATTATCATGTGcc > 1:788362/1‑140 (MQ=255)
aGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCATTATCATGTGCCt > 2:178277/1‑140 (MQ=255)
aGCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCATTATCATGTGCCt > 2:467728/1‑140 (MQ=255)
gCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCATTATCAtgt < 2:1414119/135‑1 (MQ=255)
gCAAAATGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCATTATCAtgt > 1:1414119/1‑135 (MQ=255)
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TTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTTCTTCCCTGAGATCCCCGTTGAATTTCATATTAATAAAGTGAACGAGCATTATCATGTGCCT > NC_000913/2039054‑2039324
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
