mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 186,628 | G→T | H675N (CAT→AAT) | glnD ← | PII uridylyltransferase/uridylyl removing enzyme |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 398,317 | C→A | A149E (GCG→GAG) | yaiW → | surface‑exposed outer membrane lipoprotein |
| RA | 614,853 | G→T | D233Y (GAC→TAC) | entF → | apo‑serine activating enzyme |
| RA | 643,630 | C→A | G113V (GGC→GTC) | rnk ← | nucleoside diphosphate kinase regulator |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,284,167 | G→T | L188L (CTG→CTT) | narH → | nitrate reductase A subunit beta |
| RA | 1,287,230 | A→G | noncoding (7/171 nt) | rttR ← | small RNA RttR |
| MC JC | 1,287,263 | Δ119 bp | [tyrV] | [tyrV] | |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| RA | 1,730,621 | C→A | P512H (CCC→CAC) | lhr → | putative ATP‑dependent helicase Lhr |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 1,997,454 | C→A | A121S (GCC→TCC) | tcyN ← | cystine ABC transporter ATP binding subunit |
| RA | 2,039,191 | C→A | T79N (ACT→AAT) | yedX → | hydroxyisourate hydrolase/transthyretin‑related protein |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,277,596 | C→A | R433S (CGT→AGT) | yejF → | putative oligopeptide ABC transporter ATP binding subunit |
| RA | 2,424,614 | G→T | A207E (GCG→GAG) | hisM ← | lysine/arginine/ornithine ABC transporter/histidine ABC transporter, membrane subunit HisM |
| RA | 2,429,165 | G→T | F358L (TTC→TTA) | purF ← | amidophosphoribosyltransferase |
| RA | 2,511,677 | C→A | D344Y (GAT→TAT) | mntH ← | Mn(2(+))/Fe(2(+)): H(+) symporter MntH |
| RA | 2,574,187 | C→A | S40I (AGC→ATC) | eutT ← | putative ethanolamine utilization cobalamin adenosyltransferase |
| RA | 3,007,831 | G→T | A108S (GCC→TCC) | ygeX → | 2,3‑diaminopropionate ammonia‑lyase |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| JC JC | 4,062,283 | IS5 (–) +4 bp | coding (37‑40/1266 nt) | yihN → | putative transporter YihN |
| RA | 4,138,748 | G→T | T96T (ACC→ACA) | gldA ← | L‑1,2‑propanediol dehydrogenase/glycerol dehydrogenase |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1286878 | 1287226 | 349 | 21 [20] | [20] 23 | [ychS]–[rttR] | [ychS],tpr,[rttR] |
| * | * | ÷ | NC_000913 | 3102950 | 3104083 | 1134 | 22 [20] | [19] 22 | mutY | mutY |
| * | * | ÷ | NC_000913 | 3423766–3424234 | 3424526–3424239 | 6–761 | 23 [20] | [18] 22 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 375102 = | NA (NA) | 24 (0.360) | 15/216 | 2.5 | NA | noncoding (17/36 nt) | other | REP31d |
| ? | NC_000913 | 377351 = | NA (NA) | noncoding (16/37 nt) | other | REP32a | |||||
| * | ? | NC_000913 | 1207790 = | 90 (1.070) | 39 (0.520) | 30/244 | 1.1 | 34.0% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 72 (0.970) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 90 (1.070) | 20 (0.270) | 16/244 | 2.7 | 20.9% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 72 (0.970) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 122 (1.490) | 70/268 | 0.0 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 120 (1.420) | 114 (1.360) | 51/274 | 0.3 | 65.5% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 1 (0.010) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 111 (1.310) | 62/276 | 0.1 | 99.1% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 1 (0.010) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||