Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F73 I1 R1 29 84.2 2875838 99.2% 2852831 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,138,748 G→T T96T (ACC→ACA)  gldA ← L‑1,2‑propanediol dehydrogenase/glycerol dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,138,7480GT100.0% 289.4 / NA 87T96T (ACC→ACA) gldAL‑1,2‑propanediol dehydrogenase/glycerol dehydrogenase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (51/36);  total (51/36)

CGGTCAAACTCACCCTCATCGGTGTAGATAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGGGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTCTACTACCAGTCCAGCATCTTTAAAG  >  NC_000913/4138620‑4138883
                                                                                                                                |                                                                                                                                       
cGGTCAAACTCACCCTCATCGGTGTAGATAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGcc                                                                                                                              >  2:792211/1‑140 (MQ=255)
cGGTCAAACTCACCCTCATCGGTGTAGATAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGcc                                                                                                                              >  2:1210754/1‑140 (MQ=255)
cGGTCAAACTCACCCTCATCGGTGTAGATAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGcc                                                                                                                              >  2:30857/1‑140 (MQ=255)
cGGTCAAACTCACCCTCATCGGTGTAGATAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGcc                                                                                                                              >  1:598746/1‑140 (MQ=255)
 ggTCAAACTCACCCTCATCGGTGTAGATAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCa                                                                                                                             <  1:1210754/140‑1 (MQ=255)
 ggTCAAACTCACCCTCATCGGTGTAGATAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCa                                                                                                                             <  1:792211/140‑1 (MQ=255)
       aCTCACCCTCATCGGTGTAGATAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATa                                                                                                                       <  2:1155812/140‑1 (MQ=255)
              cTCATCGGTGTAGATAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGaa                                                                                                                <  2:870055/140‑1 (MQ=255)
              cTCATCGGTGTAGATAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGaa                                                                                                                <  2:1300955/140‑1 (MQ=255)
                 aTCGGTGTAGATAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCACTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGaa                                                                                                                >  1:21627/1‑137 (MQ=255)
                 aTCGGTGTAGATAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCACTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGaa                                                                                                                <  2:21627/137‑1 (MQ=255)
                     gtgtAGATAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGcc                                                                                                         >  2:724218/1‑140 (MQ=255)
                     gtgtAGATAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGcc                                                                                                         >  1:173675/1‑140 (MQ=255)
                       gtAGATAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCcac                                                                                                       >  1:615679/1‑140 (MQ=255)
                         aGATAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGaa                                                                                                                >  1:960255/1‑129 (MQ=255)
                         aGATAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGaa                                                                                                                <  2:960255/129‑1 (MQ=255)
                           aTAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTg                                                                                                   >  1:1054683/1‑140 (MQ=255)
                             aaCAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTgcg                                                                                                 <  1:1298303/140‑1 (MQ=255)
                             aaCAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTgcg                                                                                                 >  2:807000/1‑140 (MQ=255)
                             aaCAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTgcg                                                                                                 <  2:1054683/140‑1 (MQ=255)
                                aGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAg                                                                                              >  1:963267/1‑140 (MQ=255)
                                aGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAg                                                                                              >  2:57871/1‑140 (MQ=255)
                                  aCAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTgcg                                                                                                 >  1:36794/1‑135 (MQ=255)
                                  aCAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTgcg                                                                                                 <  2:36794/135‑1 (MQ=255)
                                  aCAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGtc                                                                                            >  1:295765/1‑140 (MQ=255)
                                  aCAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGtc                                                                                            >  1:1231103/1‑140 (MQ=255)
                                     aTGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGcc                                                                                                         <  2:615072/124‑1 (MQ=255)
                                     aTGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGcc                                                                                                         >  1:615072/1‑124 (MQ=255)
                                     aTGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTcc                                                                                         >  2:51825/1‑140 (MQ=255)
                                      tGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCcg                                                                                        <  1:1067134/140‑1 (MQ=255)
                                       gcgcTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCcgc                                                                                       >  2:142817/1‑140 (MQ=255)
                                           tGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATg                                                                                   <  2:636304/140‑1 (MQ=255)
                                               cGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCAc                                                                               <  1:1256667/140‑1 (MQ=255)
                                                  tGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCa                                                                            >  2:486563/1‑140 (MQ=255)
                                                  tGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCa                                                                            >  2:703007/1‑140 (MQ=255)
                                                  tGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCa                                                                            <  2:489244/140‑1 (MQ=255)
                                                  tGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCa                                                                            >  1:721484/1‑140 (MQ=255)
                                                  tGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCa                                                                            >  1:215816/1‑140 (MQ=255)
                                                  tGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCa                                                                            >  1:554972/1‑140 (MQ=255)
                                                       cGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACATTGCGCAGTCTCCGCGATGCCACGCAGACgg                                                                       >  1:518144/1‑140 (MQ=255)
                                                       cGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACgg                                                                       >  1:538542/1‑140 (MQ=255)
                                                       cGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACgg                                                                       >  1:1379843/1‑140 (MQ=255)
                                                        ggTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGt                                                                      <  2:732235/140‑1 (MQ=255)
                                                        ggTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGt                                                                      <  1:57871/140‑1 (MQ=255)
                                                            gagGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGAt                                                                  >  2:1081810/1‑140 (MQ=255)
                                                            gagGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGAt                                                                  >  1:1295242/1‑140 (MQ=255)
                                                             agGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGAtc                                                                 <  2:615679/140‑1 (MQ=255)
                                                                  aTAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCAtt                                                            >  1:530169/1‑140 (MQ=255)
                                                                    aGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCAtttt                                                          <  2:858125/140‑1 (MQ=255)
                                                                    aGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCAtttt                                                          >  2:240208/1‑140 (MQ=255)
                                                                        ggTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACATTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGa                                                      <  2:518144/140‑1 (MQ=255)
                                                                         gTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGaa                                                     >  1:716511/1‑140 (MQ=255)
                                                                         gTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGaa                                                     >  2:955655/1‑140 (MQ=255)
                                                                             gATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACAtt                                                 <  2:963267/140‑1 (MQ=255)
                                                                             gATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACAtt                                                 <  2:215816/140‑1 (MQ=255)
                                                                                         aaCACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACg                                     >  2:467445/1‑140 (MQ=255)
                                                                                          acacCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACgg                                    <  2:538542/140‑1 (MQ=255)
                                                                                             cccATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGgcgc                                 >  2:463290/1‑140 (MQ=255)
                                                                                              ccATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCa                                <  1:184793/140‑1 (MQ=255)
                                                                                               cATGAAATGTGCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCaa                               <  1:467445/140‑1 (MQ=255)
                                                                                                        tgCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCaa                               <  2:253660/131‑1 (MQ=255)
                                                                                                        tgCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCaa                               >  1:253660/1‑131 (MQ=255)
                                                                                                        tgCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCa                                >  2:446746/1‑130 (MQ=255)
                                                                                                        tgCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCa                                <  1:446746/130‑1 (MQ=255)
                                                                                                        tgCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAAttt                            <  1:1023120/134‑1 (MQ=255)
                                                                                                        tgCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAAttt                            >  2:1023120/1‑134 (MQ=255)
                                                                                                        tgCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTctgcta                      >  2:317442/1‑140 (MQ=255)
                                                                                                        tgCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTctacta                      >  1:1352550/1‑140 (MQ=255)
                                                                                                        tgCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTctacta                      >  1:1265458/1‑140 (MQ=255)
                                                                                                        tgCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTctacta                      >  2:611126/1‑140 (MQ=255)
                                                                                                        tgCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTctacta                      >  1:1251282/1‑140 (MQ=255)
                                                                                                        tgCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTctacta                      >  2:15720/1‑140 (MQ=255)
                                                                                                        tgCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTctacta                      >  2:601948/1‑140 (MQ=255)
                                                                                                        tgCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTctacta                      <  1:468409/140‑1 (MQ=255)
                                                                                                        tgCCAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTctacta                      >  2:1362333/1‑140 (MQ=255)
                                                                                                        tgCCAGTGCTTTGGCAGTATCG‑GTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTCtactac                     <  2:1341482/140‑1 (MQ=255)
                                                                                                        tgCCAGTGCTTTGGCAGTATCG‑GTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTCtactac                     >  1:1341482/1‑140 (MQ=255)
                                                                                                          ccAGTGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTCTACTAcc                    <  1:955655/140‑1 (MQ=255)
                                                                                                              tGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTCTACTACCAGTc                >  1:865294/1‑140 (MQ=255)
                                                                                                              tGCTTTGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTCTACTACCAGTc                >  2:184561/1‑140 (MQ=255)
                                                                                                                 tttGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTCTACTACCAGTCCAg             <  2:530169/140‑1 (MQ=255)
                                                                                                                  ttGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTCTACTACCAGTCCAGc            <  2:1102349/140‑1 (MQ=255)
                                                                                                                  ttGGCAGTATCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTCTACTACCAGTCCAGc            <  1:1362333/140‑1 (MQ=255)
                                                                                                                          aTCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTCTACTACCAGTCCAGCATCTTTaa    >  2:133638/1‑140 (MQ=255)
                                                                                                                          aTCGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTCTACTACCAGTCCAGCATCTTTaa    >  1:1044591/1‑140 (MQ=255)
                                                                                                                            cGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTCTACTACCAGTCCAGCATCTTTAAAg  <  2:785110/140‑1 (MQ=255)
                                                                                                                            cGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTCTACTACCAGTCCAGCATCTTTAAAg  <  2:1295242/140‑1 (MQ=255)
                                                                                                                            cGAGTGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTCTACTACCAGTCCAGCATCTTTAAAg  <  1:51825/140‑1 (MQ=255)
                                                                                                                                |                                                                                                                                       
CGGTCAAACTCACCCTCATCGGTGTAGATAACAGACAATGCGCTGCACGGTGCATCGGTAGAGGCGATAGTCGGTGCGATCGCTACCGGAACACCCATGAAATGTGCCAGTGCTTTGGCAGTATCGAGGGTTTTTCCGCCACCGATACCGAGAATTGCGCCACACTGCGCAGTCTCCGCGATGCCACGCAGACGGTCGATCTCATTTTGCGAACATTCACCGCCAAACGGCGCAATTTCTACTACCAGTCCAGCATCTTTAAAG  >  NC_000913/4138620‑4138883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A