Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F73 I1 R1 26 53.7 1833324 99.1% 1816824 139.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,068,651 G→T A53D (GCC→GAC)  argO ← L‑arginine exporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,068,6510GT100.0% 252.6 / NA 70A53D (GCC→GAC) argOL‑arginine exporter
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (37/33);  total (37/33)

TATTACTGCTCATTGCTGTTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGCGGTAGGATCATAGCCGCCCCAAGTGCAAGA  >  NC_000913/3068523‑3068785
                                                                                                                                |                                                                                                                                      
tatTACTGCTCATTGCTGTTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAgg                                                                                                                             >  1:776385/1‑140 (MQ=255)
tatTACTGCTCATTGCTGTTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAgg                                                                                                                             >  1:754750/1‑140 (MQ=255)
tatTACTGCTCATTGCTGTTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAgg                                                                                                                             >  2:457867/1‑140 (MQ=255)
   tACTGCTCATTGCTGTTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCTCCAAAAATCCCGTCGCAAATCAGGAcc                                                                                                                          <  2:556632/140‑1 (MQ=255)
     cTGCTCATTGCTGTTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCaa                                                                                                                        >  2:204759/1‑140 (MQ=255)
      tGCTCATTGCTGTTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCaaa                                                                                                                       >  2:630352/1‑140 (MQ=255)
        cTCATTGCTGTTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATc                                                                                                                     >  1:493208/1‑140 (MQ=255)
          cATTGCTGTTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGc                                                                                                                   >  2:789820/1‑140 (MQ=255)
          cATTGCTGTTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGc                                                                                                                   >  2:628921/1‑140 (MQ=255)
           aTTGCTGTTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCt                                                                                                                  >  1:245544/1‑140 (MQ=255)
             tGCTGTTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGa                                                                                                                <  1:430337/140‑1 (MQ=255)
                  ttttAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATc                                                                                                                     >  1:674818/1‑130 (MQ=255)
                  ttttAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATc                                                                                                                     <  2:674818/130‑1 (MQ=255)
                  ttttAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGca                                                                                                           <  1:398128/140‑1 (MQ=255)
                  ttttAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGca                                                                                                           <  2:549990/140‑1 (MQ=255)
                       aaaGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAg                                                                                                      >  1:114161/1‑140 (MQ=255)
                       aaaGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAg                                                                                                      <  2:526685/140‑1 (MQ=255)
                         aGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTa                                                                                                    >  2:198922/1‑140 (MQ=255)
                            gcCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAgg                                                                                                 >  2:223613/1‑140 (MQ=255)
                            gcCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAgg                                                                                                 >  2:72575/1‑140 (MQ=255)
                            gcCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAgg                                                                                                 <  2:844155/140‑1 (MQ=255)
                            gcCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAgg                                                                                                 <  2:114161/140‑1 (MQ=255)
                            gcCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAgg                                                                                                 >  1:885245/1‑140 (MQ=255)
                             ccAAAGCCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGTCCAAATCGCTGAGAGCACAAAGTAAGGc                                                                                                <  2:708026/140‑1 (MQ=255)
                                  aCCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCa                                                                                           <  2:701442/140‑1 (MQ=255)
                                    cATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATa                                                                                         <  1:255536/140‑1 (MQ=255)
                                     aTACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATaa                                                                                        >  2:466040/1‑140 (MQ=255)
                                     aTACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATaa                                                                                        >  2:148595/1‑140 (MQ=255)
                                      tACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAAt                                                                                       >  1:837395/1‑140 (MQ=255)
                                       aCCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAAtg                                                                                      <  2:885245/140‑1 (MQ=255)
                                            aGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTa                                                                                 <  1:789820/140‑1 (MQ=255)
                                            aGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTa                                                                                 >  1:739152/1‑140 (MQ=255)
                                              cAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACt                                                                               >  1:795721/1‑140 (MQ=255)
                                                   agGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTgacga                                                                          >  2:24441/1‑140 (MQ=255)
                                                      cTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTgac                                                                            <  1:364781/135‑1 (MQ=255)
                                                      cTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTgac                                                                            >  2:364781/1‑135 (MQ=255)
                                                      cTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGt                                                                       <  2:540516/140‑1 (MQ=255)
                                                      cTACGCCG‑CCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTa                                                                      >  2:386974/1‑140 (MQ=255)
                                                        aCGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTAt                                                                     >  1:27025/1‑140 (MQ=255)
                                                         cgccgcCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATg                                                                    >  1:597093/1‑140 (MQ=255)
                                                               cccAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGa                                                              >  2:190472/1‑140 (MQ=255)
                                                               cccAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGa                                                              <  2:245544/140‑1 (MQ=255)
                                                               cccAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGa                                                              >  2:451044/1‑140 (MQ=255)
                                                                 cAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGAtt                                                            <  1:630352/140‑1 (MQ=255)
                                                                  aGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATtc                                                           <  1:223613/140‑1 (MQ=255)
                                                                    gTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATtcat                                                         <  1:446649/140‑1 (MQ=255)
                                                                       aCCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATcac                                                      >  2:158871/1‑140 (MQ=255)
                                                                        ccAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCt                                                                <  1:109492/129‑1 (MQ=255)
                                                                        ccAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCt                                                                >  2:109492/1‑129 (MQ=255)
                                                                         cAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACaa                                                    >  1:625435/1‑140 (MQ=255)
                                                                         cAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACaa                                                    <  2:837395/140‑1 (MQ=255)
                                                                             gcCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGc                                                <  1:457867/140‑1 (MQ=255)
                                                                             gcCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGc                                                <  2:779241/140‑1 (MQ=255)
                                                                                       aCGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGa                                      <  1:451044/140‑1 (MQ=255)
                                                                                         ggCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGAcc                                    >  2:523796/1‑140 (MQ=255)
                                                                                            gACTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAg                                 <  1:466040/140‑1 (MQ=255)
                                                                                             aCTGCATCAATAACGCGTTGCCGCCAAAAATCCCGTCGAAAATCAGGACCAAAGCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGc                                <  2:739152/140‑1 (MQ=255)
                                                                                              cTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGCg                               >  1:376112/1‑140 (MQ=255)
                                                                                              cTGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGCg                               >  1:269691/1‑140 (MQ=255)
                                                                                               tGCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGCgg                              <  2:625435/140‑1 (MQ=255)
                                                                                                gCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGCGGt                             <  2:597093/140‑1 (MQ=255)
                                                                                                gCATCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGCGGt                             <  1:148595/140‑1 (MQ=255)
                                                                                                  aTCAATAACGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGCGGTAg                           <  2:754750/140‑1 (MQ=255)
                                                                                                         aCGCGCTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGCGGTAGGATCATa                    <  2:67322/140‑1 (MQ=255)
                                                                                                           gcgcTGCCACCAAAAATCTCGTCGCAAATCAGGACCAAATCGCTGATAGAACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGAGGTAGGATCATAgc                  >  2:59665/1‑140 (MQ=255)
                                                                                                           gcgcTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGCGGTAGGATCATAgc                  <  2:493208/140‑1 (MQ=255)
                                                                                                           gcgcTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGCGGTAGGATCATAgc                  >  1:803482/1‑140 (MQ=255)
                                                                                                            cgcTGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGCGGTAGGATCATAgcc                 >  2:141013/1‑140 (MQ=255)
                                                                                                               tGCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGCGGTAGGATCATAgccgcc              >  2:10809/1‑140 (MQ=255)
                                                                                                                gCCACCAAAAATCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGCGGTAGGATCATAGCCGccc             >  1:513286/1‑140 (MQ=255)
                                                                                                                         aaTCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGCGGTAGGATCATAGCCGCCCCAAGTGCaa    <  1:190472/140‑1 (MQ=255)
                                                                                                                         aaTCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGCGGTAGGATCATAGCCGCCCCAAGTGCaa    <  2:795721/140‑1 (MQ=255)
                                                                                                                         aaTCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGCGGTAGGATCATAGCCGCCCCAAGTGCaa    <  1:386974/140‑1 (MQ=255)
                                                                                                                           tCCCGTCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGCGGTAGGATCATAGCCGCCCCAAGTGCAAGa  >  2:875251/1‑140 (MQ=255)
                                                                                                                                |                                                                                                                                      
TATTACTGCTCATTGCTGTTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAGGACCAAATCGCTGATAGCACAAAGTAAGGCAATCATAATGTGGTACTGACGACGTATGCCCTGATTCATCACAAAAGCATTTTGTGGACCGAGCGGTAGGATCATAGCCGCCCCAAGTGCAAGA  >  NC_000913/3068523‑3068785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A