Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F73 I1 R1	28	130.3	4467684	99.3%	4436410	139.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,511,277	G→T	D93Y (GAT→TAT)	ypeC →	DUF2502 domain‑containing protein YpeC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,511,277	0	G	T	95.7%	158.2 / ‑0.3	47	D93Y (GAT→TAT)	ypeC	DUF2502 domain‑containing protein YpeC
Reads supporting (aligned to +/- strand): ref base G (1/1); new base T (35/10); total (36/11)
Fisher's exact test for biased strand distribution p-value = 4.17e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.23e-01

TCACTGGCGCGACCGTGACTACTGGCATCGCAATTATGAGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGC  >  NC_000913/2511141‑2511412

tCACTGGCGCGACCGTGACTACTGGCATCGCAATTATGAGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATc                                                                                                                                      <  2:1901641/140‑1 (MQ=255)

       cgcgACCGTGACTACTGGCATCGCAATTATGAGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGa                                                                                                                               >  2:2158235/1‑140 (MQ=255)

       cgcgACCGTGACTACTGGCATCGCAATTATGAGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGa                                                                                                                               >  1:328945/1‑140 (MQ=255)

              gTGACTACTGGCATCGCAATTATGAGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATcgc                                                                                                                        <  2:2185054/140‑1 (MQ=255)

                  ctactGGCATCGCAATTATGAGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGaa                                                                                                                    <  2:314044/140‑1 (MQ=255)

                  ctactGGCATCGCAATTATGAGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGaa                                                                                                                    <  1:1492610/140‑1 (MQ=255)

                  ctactGGCATCGCAATTATGAGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGaa                                                                                                                    <  1:802569/140‑1 (MQ=255)

                    actGGCATCGCAATTATGAGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGaaaa                                                                                                                  <  2:562197/140‑1 (MQ=255)

                      tGGCATCGCAATTATGAGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAgg                                                                                                                >  1:2138124/1‑140 (MQ=255)

                         cATCGCAATTATGAGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCg                                                                                                             >  2:1907528/1‑140 (MQ=255)

                         cATCGCAATTATGAGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCg                                                                                                             <  2:1784131/140‑1 (MQ=255)

                          aTCGCAATTATGAGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCgg                                                                                                            >  1:1093497/1‑140 (MQ=255)

                                      ggTGGCGCAAAACCGGTTGGGGGCGTCAGGATAATGCCTCCCACGGGGGCTGGGATAAGCGTAAAGCGTATGAGCGGGGCTATCGTGAAGGCTGGCGCTACCGTGACGAACATCGCGGAAAAGGCGGGGGTCATGGGCAc                                                                                                <  2:141911/139‑1 (MQ=255)

                                      aggggCGCAAAAACCGTTGGTGGCGTCATGATAATGTCTCCCACCGGGGCTGGGATAAGCGTAAAGCGTATGAGGGTGGCTATCGTGAAGGTTGGCGCTATCGTGACGACCAGCGAGGAAAAGGCCGGGGTCTTGGGcgc                                                                                                <  2:217266/137‑3 (MQ=255)

                                      aGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGACg                                                                                                             <  1:1417859/127‑1 (MQ=255)

                                      aGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGACg                                                                                                             >  2:1417859/1‑127 (MQ=255)

                                       gTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCAcc                                                                                               >  1:871229/1‑140 (MQ=255)

                                        tGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCg                                                                                              >  1:749601/1‑140 (MQ=255)

                                        tGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCg                                                                                              <  1:76899/140‑1 (MQ=255)

                                         ggCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCg                                                                                                             <  1:2190913/124‑1 (MQ=255)

                                         ggCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCg                                                                                                             >  2:2190913/1‑124 (MQ=255)

                                         ggCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATAGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGc                                                                                             >  2:1548168/1‑140 (MQ=255)

                                           cgcAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCa                                                                                           >  2:486708/1‑140 (MQ=255)

                                           cgcAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCATAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCa                                                                                           >  2:278706/1‑140 (MQ=255)

                                             cAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCAtt                                                                                         >  2:781493/1‑140 (MQ=255)

                                             cAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCAtt                                                                                         >  1:1565041/1‑140 (MQ=255)

                                                aaaCCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTaaa                                                                                      >  1:2078746/1‑140 (MQ=255)

                                                    cGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGAAAAAGGCCGGGGTCATGGGCACCGCCATTAAAcgcg                                                                                  <  2:1362046/140‑1 (MQ=255)

                                                    cGTTGGTGGCGTAATGATAATGGCTCCCCCCGGGGCGGGGATAAGCGTAAAGCGTATGAGGGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGAAAAAGGCGGGGGTCAGGGGCACCGCCATTAAAcgcg                                                                                  <  2:1565041/140‑1 (MQ=255)

                                                         ggggCGTCATGATAATGGCTCCCGCCGGGGCGGGGATAGGCGTAAGGCGTATGGGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAGGGCCGGGGTCAGGGGCACCGCCATTAAACGCGTCCGc                                                                             <  2:1982801/138‑1 (MQ=255)

                                                            gCGTCATGAAAATGGCTCCCACGGGGGCGGGGATAAGCGAAAAGCGTAGGAGCGTGGCTATCGGGAAGGCGGGCGCTATCGTGACGATCATCGCGAAAAGGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCaa                                                                          <  2:328945/140‑1 (MQ=255)

                                                              gTCATAATAATGGCTCCCCCGGGGGCTGGGATAAGCGTAAGGCGTATGGGGGTGGCTATCGGGAAGGCGGGCGCTATCGTGACGATCATCGGGAAAAGGGCGGGGGTCAGGGGCCCCGCCATTAAACGCGTCCGCCAATg                                                                        <  2:927934/140‑1 (MQ=255)

                                                               tCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATgg                                                                       <  1:2158235/140‑1 (MQ=255)

                                                               tCATGATAATGGCTACCACCGGGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATGGTGAAGGCTGGCGCTATCGTGCCGATCATCGCGGAAAGGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATgg                                                                       <  2:738790/140‑1 (MQ=255)

                                                                     aaaTGGCTACCACCGGGGCGGGGATAAGCGAAAAGCGTAGGAGGGTGGTTATCGTGAAGGCTGGCGCTATCGTGACGACCATCGCGGAAAAGGCCGGGGTCAGGGGCACCGCCATTAAACGCGTCCGCCAATGGAGcaca                                                                 <  2:1858854/139‑1 (MQ=255)

                                                                        tGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCCCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATg                                                              >  2:1860117/1‑140 (MQ=255)

                                                                                cccGTGGCTGGGATAAGCGAAAAGCGTATGAGGGTGGCTATCGTGAAGGCGGGCGCTATCGTGACGATCACCGGGAAAAAGGCCGGGGTCAGGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGc                                                      <  2:1125407/139‑1 (MQ=255)

                                                                                  ggTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTACGGTGAAGGCTGGCGCTATCGTGACGATCATCGCGAAAAGGGCGGGGGTCAGGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGa                                                    <  2:204655/139‑1 (MQ=255)

                                                                                  cGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGa                                                    >  1:1224996/1‑140 (MQ=255)

                                                                                    tGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACg                                                  >  2:1482644/1‑140 (MQ=255)

                                                                                    tGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACg                                                  >  1:1405314/1‑140 (MQ=255)

                                                                                      gCTGGGAAAAGCGAAAAGCGTATGGGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGAAAAGGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCt                                                <  2:2078746/140‑1 (MQ=255)

                                                                                        ggggATAAGCGAAAAGCGTATGGGCGTGGCTATCGGGAAGGCTGGCGCTATCGTGACGATCATCGCGAAAAAGGCCGGGGTCAGGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAg                                              <  2:1398854/139‑1 (MQ=255)

                                                                                          ggATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTg                                            >  2:766467/1‑140 (MQ=255)

                                                                                           gATAAGCGTAAAGCGTGTGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGc                                           >  2:1412123/1‑140 (MQ=255)

                                                                                            aTAAGCGTAAAGCATATGAGCGTGGCTATCGTGAAGGCTGGCGATATCGTGACGATCACCGCGAAAAAGACCAGGGACATGTGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCg                                          >  2:1618259/1‑140 (MQ=255)

                                                                                                gcgtaaagcgtaTGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCtt                                      >  1:474537/1‑140 (MQ=255)

                                                                                                  gtaaagcgtaTGAGCGGGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTAt                                    <  1:781493/140‑1 (MQ=255)

                                                                                                     aagcgtaTGGGCGTGGCTATCGGGAGGGCGGGCGCTATCGTGCCGATCACCGCGAAAAGGGCCGGGGTCAGGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAg                                 <  2:609479/140‑1 (MQ=255)

                                                                                                     aagcgtaTGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAg                                 <  1:278706/140‑1 (MQ=255)

                                                                                                      agcgtaTGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAg                                 >  1:1217072/1‑139 (MQ=255)

                                                                                                      agcgtaTGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAg                                 <  2:1217072/139‑1 (MQ=255)

                                                                                                         gtaTGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCt                             >  2:788995/1‑140 (MQ=255)

                                                                                                         gtaTGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCt                             >  2:495511/1‑140 (MQ=255)

                                                                                                          taggAGGGTGGTTATCGTGAAGGCGGCCCTTATCGTGACGACCGTCGCGAAAAGGGCCGGGTTCATGGGCCCCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTa                            <  2:1224996/137‑1 (MQ=25)

                                                                                                           aTGAGCGTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTAc                           >  2:1429918/1‑140 (MQ=255)

                                                                                                                 gTGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCg                     >  1:443918/1‑140 (MQ=255)

                                                                                                                  tGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCgg                    >  1:1863870/1‑140 (MQ=255)

                                                                                                                  tGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCgg                    >  2:1770728/1‑140 (MQ=255)

                                                                                                                  tGGCTATCGTGAAGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCgg                    >  2:521478/1‑140 (MQ=255)

                                                                                                                             aaGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAAcgc         >  2:1434243/1‑140 (MQ=255)

                                                                                                                              aGGCTGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAAcgcg        <  1:766467/140‑1 (MQ=255)

                                                                                                                                  tGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAgg    >  1:113007/1‑140 (MQ=255)

                                                                                                                                  tGGCGCTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAgg    >  1:194935/1‑140 (MQ=255)

                                                                                                                                   ggCGCTATCGTGACGATCATCGGGAAAAAGGCCGGGGTCAGGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAggg   <  2:2148434/140‑1 (MQ=255)

                                                                                                                                   ggCGCTATCGGGACGATCACCGGGAAAAGGGCCGGGGTCATGGGCCCCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAggg   <  2:1977802/140‑1 (MQ=38)

                                                                                                                                    gcgcTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGc  >  2:905268/1‑140 (MQ=255)

                                                                                                                                    gcgcTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGc  >  2:909925/1‑140 (MQ=255)

                                                                                                                                    gcgcTATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGc  >  2:97317/1‑140 (MQ=255)

TCACTGGCGCGACCGTGACTACTGGCATCGCAATTATGAGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCCGGGGTCATGGGCACCGCCATTAAACGCGTCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGC  >  NC_000913/2511141‑2511412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A