Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F73 I1 R1 28 130.3 4467684 99.3% 4436410 139.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,348,011 G→T A245E (GCA→GAA)  dcuB ← anaerobic C4‑dicarboxylate transporter DcuB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,348,0110GT100.0% 542.3 / NA 150A245E (GCA→GAA) dcuBanaerobic C4‑dicarboxylate transporter DcuB
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (83/67);  total (83/67)

Only 100 of 151 total aligned reads displayed.

GGTTTTGGTCAGGATAATAATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTGCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTTATC  >  NC_000913/4347875‑4348144
                                                                                                                                            |                                                                                                                                     
ggTTTTGGTCAGGATAATAATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTccc                                                                                                                                    >  1:715790/1‑140 (MQ=255)
ggTTTTGGTCAGGATAATAATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTccc                                                                                                                                    >  1:950701/1‑140 (MQ=255)
 gTTTTGGTCAGGATAATAATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTcccc                                                                                                                                   <  2:715790/140‑1 (MQ=255)
     tGGTCAGGATAATAATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAgg                                                                                                                               <  1:544299/140‑1 (MQ=255)
      ggTCAGGATAATAATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGTACAGACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCg                                                                                                                                  >  2:500100/1‑140 (MQ=255)
        tCAGGATAATAATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGaaa                                                                                                                            <  2:950701/140‑1 (MQ=255)
           ggATAATAATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATc                                                                                                                         >  1:1827405/1‑140 (MQ=255)
            gATAATAATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGa                                                                                                                                 >  2:581651/1‑131 (MQ=255)
            gATAATAATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGa                                                                                                                                 <  1:581651/131‑1 (MQ=255)
            gATAATAATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATcc                                                                                                                        >  2:1868381/1‑140 (MQ=255)
            gATAATAATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATcc                                                                                                                        >  2:1791588/1‑140 (MQ=255)
             ataataATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCca                                                                                                                       <  2:2065988/140‑1 (MQ=255)
             ataataATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCca                                                                                                                       <  2:1934393/140‑1 (MQ=255)
              taataaTCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCcac                                                                                                                      <  2:522946/140‑1 (MQ=255)
                    tCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTgcc                                                                                                                >  2:692757/1‑140 (MQ=255)
                      aGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTgccag                                                                                                              >  1:1402574/1‑140 (MQ=255)
                        cgcCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTgccagcc                                                                                                            >  2:210233/1‑140 (MQ=255)
                        cgcCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTgccagcc                                                                                                            >  1:365083/1‑140 (MQ=255)
                           cccGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGt                                                                                                         >  2:1047860/1‑140 (MQ=255)
                           cccGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGt                                                                                                         >  1:520057/1‑140 (MQ=255)
                                       caTAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCa                                                                                             <  2:1484251/140‑1 (MQ=255)
                                       caTAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCa                                                                                             <  1:1047860/140‑1 (MQ=255)
                                              aTCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGtttttt                                                                                      >  1:1219953/1‑140 (MQ=255)
                                              aTCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGtttttt                                                                                      >  1:1447671/1‑140 (MQ=255)
                                                 tGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTTCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATc                                                                                   >  1:996589/1‑140 (MQ=255)
                                                 tGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATc                                                                                   >  1:1196377/1‑140 (MQ=255)
                                                 tGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATc                                                                                   >  1:2192248/1‑140 (MQ=255)
                                                 tGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATc                                                                                   >  2:694555/1‑140 (MQ=255)
                                                   aaTAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCca                                                                                 >  2:880642/1‑140 (MQ=255)
                                                   aaTAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCca                                                                                 >  1:658292/1‑140 (MQ=255)
                                                      aaCCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCcagca                                                                              <  2:365083/140‑1 (MQ=255)
                                                          aGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGt                                                                          <  2:1157400/140‑1 (MQ=255)
                                                          aGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGt                                                                          >  1:1141631/1‑140 (MQ=255)
                                                          aGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGt                                                                          <  1:621606/140‑1 (MQ=255)
                                                          aGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGt                                                                          <  2:537096/140‑1 (MQ=255)
                                                           gT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTc                                                                         >  2:1180327/1‑140 (MQ=255)
                                                            t‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTcg                                                                        <  2:1352360/140‑1 (MQ=255)
                                                            t‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTcg                                                                        <  1:1658036/140‑1 (MQ=255)
                                                            t‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTcg                                                                        >  2:86155/1‑140 (MQ=255)
                                                            t‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTcg                                                                        <  2:2004642/140‑1 (MQ=255)
                                                                 aCCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTcgc                                                                       >  2:1320364/1‑140 (MQ=255)
                                                                    aTCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGt                                                                    <  1:86155/140‑1 (MQ=255)
                                                                     tCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTa                                                                   >  2:1035954/1‑140 (MQ=255)
                                                                     tCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTa                                                                   <  2:534296/140‑1 (MQ=255)
                                                                     tCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTa                                                                   >  1:1507247/1‑140 (MQ=255)
                                                                     tCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTa                                                                   >  2:1555809/1‑140 (MQ=255)
                                                                     tCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTa                                                                   >  2:1719127/1‑140 (MQ=255)
                                                                     tCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTa                                                                   <  2:1141631/140‑1 (MQ=255)
                                                                     tCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTa                                                                   >  1:1342199/1‑140 (MQ=255)
                                                                     tCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTa                                                                   >  2:610321/1‑140 (MQ=255)
                                                                     tCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTa                                                                   >  2:835867/1‑140 (MQ=255)
                                                                     tCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTa                                                                   <  1:1599377/140‑1 (MQ=255)
                                                                      cGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTAt                                                                  <  2:1219953/140‑1 (MQ=255)
                                                                      cGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTAt                                                                  <  1:625929/140‑1 (MQ=255)
                                                                      cGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTAt                                                                  <  1:390038/140‑1 (MQ=255)
                                                                      cGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTAt                                                                  <  1:520522/140‑1 (MQ=255)
                                                                      cGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCAAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTAt                                                                  >  2:150104/1‑140 (MQ=255)
                                                                       gACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATc                                                                 >  2:1667381/1‑140 (MQ=255)
                                                                       gACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGCTTTTTATCCAGCAGCGTCGCGGTATc                                                                 <  2:745838/140‑1 (MQ=255)
                                                                         cAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCAc                                                               <  1:1868381/140‑1 (MQ=255)
                                                                          aGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCAcc                                                              >  1:887363/1‑140 (MQ=255)
                                                                          aGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCAcc                                                              >  1:2188466/1‑140 (MQ=255)
                                                                            cGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGt                                                            >  1:1740606/1‑140 (MQ=255)
                                                                            cGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCACCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGt                                                            >  1:296783/1‑140 (MQ=255)
                                                                                ttGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAAc                                                        <  1:962825/140‑1 (MQ=255)
                                                                                      ccgAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTc                                                  <  2:1507247/140‑1 (MQ=255)
                                                                                      ccgAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTc                                                  <  2:1827405/140‑1 (MQ=255)
                                                                                       cgAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCa                                                 <  1:1731334/140‑1 (MQ=255)
                                                                                       cgAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCa                                                 <  2:372586/140‑1 (MQ=255)
                                                                                               ggACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTc                                         <  1:582684/140‑1 (MQ=255)
                                                                                                       gTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACgg                                 <  1:1228839/140‑1 (MQ=255)
                                                                                                             aTCAGCACCAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATGCTCACGGTTTTCCGGTACGGAGATGa                           <  1:1364303/140‑1 (MQ=255)
                                                                                                                     cAAGAAGGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTgg                   <  2:1309163/140‑1 (MQ=255)
                                                                                                                       agaagGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGaa                 >  1:1011902/1‑140 (MQ=255)
                                                                                                                       agaagGGCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGaa                 <  2:1689003/140‑1 (MQ=255)
                                                                                                                            ggCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGa                           <  1:2010901/125‑1 (MQ=255)
                                                                                                                            ggCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGa                           >  2:2010901/1‑125 (MQ=255)
                                                                                                                            ggCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCtt            <  2:2188466/140‑1 (MQ=255)
                                                                                                                            ggCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCtt            <  2:296783/140‑1 (MQ=255)
                                                                                                                            ggCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCtt            >  1:540869/1‑140 (MQ=255)
                                                                                                                            ggCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCtt            <  1:1528662/140‑1 (MQ=255)
                                                                                                                            ggCGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGCTTTCCGGTACGGAGATGAATTTCTGGAACTCtt            >  1:1919132/1‑140 (MQ=255)
                                                                                                                              cGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCg          >  2:1922185/1‑140 (MQ=255)
                                                                                                                              cGACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCg          >  1:266112/1‑140 (MQ=255)
                                                                                                                               gACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGt         >  2:2102422/1‑140 (MQ=255)
                                                                                                                               gACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGt         >  2:438442/1‑140 (MQ=255)
                                                                                                                               gACTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGt         <  1:1794277/140‑1 (MQ=255)
                                                                                                                                aCTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTc        >  1:1359976/1‑140 (MQ=255)
                                                                                                                                 cTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCt       <  2:1342199/140‑1 (MQ=255)
                                                                                                                                 cTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCt       >  1:989581/1‑140 (MQ=255)
                                                                                                                                 cTACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCt       <  1:150104/140‑1 (MQ=255)
                                                                                                                                  tACAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCtt      >  2:78351/1‑140 (MQ=255)
                                                                                                                                   aCAGCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCttt     >  2:1787711/1‑140 (MQ=255)
                                                                                                                                      gCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTTATc  <  2:639635/140‑1 (MQ=255)
                                                                                                                                      gCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTTATc  <  1:1667381/140‑1 (MQ=255)
                                                                                                                                      gCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTTATc  <  2:1402574/140‑1 (MQ=255)
                                                                                                                                      gCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTTATc  <  1:134078/140‑1 (MQ=255)
                                                                                                                                      gCGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGCACGGAGATGAATTTCTGGAACTCTTCGTCTTTATc  >  2:1061095/1‑140 (MQ=255)
                                                                                                                                       cGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCt       >  1:2053397/1‑134 (MQ=255)
                                                                                                                                       cGATTTCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCt       <  2:2053397/134‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                     
GGTTTTGGTCAGGATAATAATCAGCGCCCCGGTCAGCAGCATAAACATCTGAATAACCAGT‑‑‑‑ACCATCGACAGCGGTTTGCCGCCGAAGGATGGACGCAGGTCCGAATCAGCACCAAGAAGGGCGACTACAGCGATTGCCCCGAGGAAAATCCACATTGCCAGCCAGTTGCTTTTCGGCAGTTTTTTATCCAGCAGCGTCGCGGTATCACCGTAAACATACTCACGGTTTTCCGGTACGGAGATGAATTTCTGGAACTCTTCGTCTTTATC  >  NC_000913/4347875‑4348144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A