Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F73 I1 R1	28	130.3	4467684	99.3%	4436410	139.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,631,944	C→A	S404R (AGC→AGA)	slt →	soluble lytic murein transglycosylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,631,944	0	C	A	100.0%	362.7 / NA	101	S404R (AGC→AGA)	slt	soluble lytic murein transglycosylase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (49/52); total (49/52)

Only 100 of 101 total aligned reads displayed.

GTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGT  >  NC_000913/4631814‑4632077

gTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACt                                                                                                                              <  2:1937745/140‑1 (MQ=255)

 tgaagctgaagcAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTc                                                                                                                             <  2:1737809/140‑1 (MQ=255)

 tgaagctgaagcAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTc                                                                                                                             <  2:1623951/140‑1 (MQ=255)

 tgaagctgaagcAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTc                                                                                                                             <  1:596836/140‑1 (MQ=255)

  gaagctgaagcAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCa                                                                                                                            >  1:671022/1‑140 (MQ=255)

   aagctgaagcAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAg                                                                                                                           <  1:414269/140‑1 (MQ=255)

     gctgaagcAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAggg                                                                                                                         <  1:1886162/140‑1 (MQ=255)

          agcAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCgg                                                                                                                    >  2:1873632/1‑140 (MQ=255)

                 gagaTTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGgc                                                                                                             <  1:1873632/140‑1 (MQ=255)

                    aTTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGgcgcg                                                                                                          >  2:939638/1‑140 (MQ=255)

                        tGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTg                                                                                                      >  1:1834115/1‑140 (MQ=255)

                        tGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTg                                                                                                      <  2:1068096/140‑1 (MQ=255)

                        tGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTg                                                                                                      <  1:2166442/140‑1 (MQ=255)

                         gCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTgc                                                                                                     <  2:71114/140‑1 (MQ=255)

                         gCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTgc                                                                                                     >  2:397779/1‑140 (MQ=255)

                          cATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTgcg                                                                                                    <  1:1015297/140‑1 (MQ=255)

                          cATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTgcg                                                                                                    <  1:742364/140‑1 (MQ=255)

                            tCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGcgcg                                                                                                  <  1:273827/140‑1 (MQ=255)

                            tCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGcgcg                                                                                                  <  1:420371/140‑1 (MQ=255)

                            tCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGcgcg                                                                                                  <  1:852152/140‑1 (MQ=255)

                            tCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGcgcg                                                                                                  >  2:985559/1‑140 (MQ=255)

                            tCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGcgcg                                                                                                  <  1:1248393/140‑1 (MQ=255)

                             cAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGa                                                                                                 >  1:260929/1‑140 (MQ=255)

                               aCTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGt                                                                                               <  1:1704403/140‑1 (MQ=255)

                                 tCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTg                                                                                             <  2:671022/140‑1 (MQ=255)

                                 tCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTACGCGAGTTg                                                                                             <  2:28912/140‑1 (MQ=255)

                                   aTGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGAt                                                                                           >  2:1257248/1‑140 (MQ=255)

                                   aTGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGAt                                                                                           <  1:1722875/140‑1 (MQ=255)

                                    tGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATg                                                                                          >  1:1192075/1‑140 (MQ=255)

                                        aCAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACt                                                                                      <  1:2005550/140‑1 (MQ=255)

                                        aCAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACt                                                                                      <  1:1675274/140‑1 (MQ=255)

                                          aGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTgg                                                                                    >  2:1991769/1‑140 (MQ=255)

                                          aGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTgg                                                                                    >  2:281603/1‑140 (MQ=255)

                                           gCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTgc                                                                                                     <  1:95624/122‑1 (MQ=255)

                                           gCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTgc                                                                                                     >  2:95624/1‑122 (MQ=255)

                                           gCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGa                                                                                   >  2:1113179/1‑140 (MQ=255)

                                           gCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGa                                                                                   >  1:486004/1‑140 (MQ=255)

                                           gCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGa                                                                                   >  2:1161169/1‑140 (MQ=255)

                                           gCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGa                                                                                   <  2:1965868/140‑1 (MQ=255)

                                            cGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGaa                                                                                  >  2:1968095/1‑140 (MQ=255)

                                             gTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAAt                                                                                 <  2:379723/140‑1 (MQ=255)

                                             gTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAAt                                                                                 <  1:2119967/140‑1 (MQ=255)

                                             gTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAAt                                                                                 <  1:337727/140‑1 (MQ=255)

                                             gTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAAt                                                                                 <  2:698908/140‑1 (MQ=255)

                                             gTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAAt                                                                                 <  1:1502047/140‑1 (MQ=255)

                                             gTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAAt                                                                                 >  1:1744705/1‑140 (MQ=255)

                                             gTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAAt                                                                                 >  2:976731/1‑140 (MQ=255)

                                              tGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAAtc                                                                                >  1:1237961/1‑140 (MQ=255)

                                               ggTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAAtct                                                                               <  1:2097244/140‑1 (MQ=255)

                                                   tCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGat                                                                           >  1:537248/1‑140 (MQ=255)

                                                   tCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGat                                                                           >  1:2205791/1‑140 (MQ=255)

                                                      aCCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGataat                                                                        <  1:2121921/140‑1 (MQ=255)

                                                      aCCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGataat                                                                        >  2:1028367/1‑140 (MQ=255)

                                                        ccGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATAc                                                                      <  1:1196010/140‑1 (MQ=255)

                                                          gATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACcg                                                                    >  2:1076791/1‑140 (MQ=255)

                                                          gATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACcg                                                                    <  1:1394768/140‑1 (MQ=255)

                                                            tGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACcgcg                                                                  <  1:2190979/140‑1 (MQ=255)

                                                               ttGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGt                                                               >  1:757524/1‑140 (MQ=255)

                                                                tGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTa                                                              <  1:1773251/140‑1 (MQ=255)

                                                                     cacaACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAg                                                         <  1:1257248/140‑1 (MQ=255)

                                                                     cacaACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAg                                                         >  1:799976/1‑140 (MQ=255)

                                                                      acaACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGt                                                        >  1:1004407/1‑140 (MQ=255)

                                                                         aCGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTggg                                                     >  1:247664/1‑140 (MQ=255)

                                                                         aCGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTggg                                                     >  2:1294743/1‑140 (MQ=255)

                                                                          cGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGc                                                    >  1:899721/1‑140 (MQ=255)

                                                                             aTCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCaa                                                 >  1:969450/1‑140 (MQ=255)

                                                                              tCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAAt                                                <  2:1085699/140‑1 (MQ=255)

                                                                               cGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATc                                               >  2:873226/1‑140 (MQ=255)

                                                                                         tATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCa                                                  <  2:542245/127‑1 (MQ=255)

                                                                                         tATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCa                                                  >  1:542245/1‑127 (MQ=255)

                                                                                         tATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAagag                                     >  1:1688604/1‑140 (MQ=255)

                                                                                          aTGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGc                                    <  2:1237961/140‑1 (MQ=255)

                                                                                          aTGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGc                                    <  2:1004407/140‑1 (MQ=255)

                                                                                          aTGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGc                                    <  1:397779/140‑1 (MQ=255)

                                                                                          aTGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGc                                    <  2:1503065/140‑1 (MQ=255)

                                                                                           tGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCa                                   >  1:1273167/1‑140 (MQ=255)

                                                                                              gCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGt                                >  2:1748670/1‑140 (MQ=255)

                                                                                               cTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTc                               <  1:1968095/140‑1 (MQ=255)

                                                                                                 gAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCaa                             >  2:1085110/1‑140 (MQ=255)

                                                                                                 gAAGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCaa                             >  1:1089624/1‑140 (MQ=255)

                                                                                                  aaGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGTCAATCTGGTGAAGAGCAAGTCaaa                            >  2:1299382/1‑140 (MQ=255)

                                                                                                  aaGATTGATAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCaaa                            >  1:302031/1‑140 (MQ=255)

                                                                                                         aTAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGc                                    <  1:1937784/125‑1 (MQ=255)

                                                                                                         aTAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGc                                    >  2:1937784/1‑125 (MQ=255)

                                                                                                         aTAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACagag                     <  2:260929/140‑1 (MQ=255)

                                                                                                         aTAAAGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACagag                     >  1:13511/1‑140 (MQ=255)

                                                                                                           aaaGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCa                   <  1:1902239/140‑1 (MQ=255)

                                                                                                            aaGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAg                  >  2:457327/1‑140 (MQ=255)

                                                                                                             aGCGCCGCAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAgg                 >  2:594826/1‑140 (MQ=255)

                                                                                                               cgccgcAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCt               >  1:1444128/1‑140 (MQ=255)

                                                                                                                gccgcAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTc              <  1:744456/140‑1 (MQ=255)

                                                                                                                   gcAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAAc           >  1:1664951/1‑140 (MQ=255)

                                                                                                                   gcAGAATGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAAc           >  2:193069/1‑140 (MQ=255)

                                                                                                                        aTGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGgcg      <  2:486004/140‑1 (MQ=255)

                                                                                                                         tGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAGCAGAGCAGGCTCAACTGgcgc     <  1:918795/140‑1 (MQ=255)

                                                                                                                         tGTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGgcgc     <  2:247664/140‑1 (MQ=255)

                                                                                                                          gTTGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGAGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGcgcg    <  1:1076791/140‑1 (MQ=255)

                                                                                                                            tGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGGGAGTTGATCTAATGGAATCTCGATAATACCGCGCGTAGCGAGAGGGCCAATCTGGTGAAGAGCAAGTTAAAAACAGAGGAGGCTCAGCGGGCGCggg  >  2:1275978/1‑139 (MQ=255)

                                                                                                                            tGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGt  >  2:41698/1‑140 (MQ=255)

                                                                                                                            tGACAGAGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGt  <  1:1161169/140‑1 (MQ=255)

GTGAAGCTGAAGCAAAAGAGATTTTGCATCAACTCATGCAACAGCGTGGTTTCTACCCGATGGTTGCAGCACAACGCATCGGCGAAGAGTATGAGCTGAAGATTGATAAAGCGCCGCAGAATGTTGACAGCGCCCTGACTCAGGGGCCGGAGATGGCGCGCGTGCGCGAGTTGATGTACTGGAATCTCGATAATACCGCGCGTAGCGAGTGGGCCAATCTGGTGAAGAGCAAGTCAAAAACAGAGCAGGCTCAACTGGCGCGGT  >  NC_000913/4631814‑4632077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A