Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F73 I1 R1
|
31 |
34.8 |
1203930 |
99.1% |
1193094 |
139.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,060,298 |
G→T |
T182T (ACG→ACT) |
argP → |
DNA‑binding transcriptional dual regulator ArgP |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,060,298 | 0 | G | T | 100.0%
| 39.4
/ NA
| 13 | T182T (ACG→ACT) | argP | DNA‑binding transcriptional dual regulator ArgP |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (6/7); total (6/7) |
CGAAGTGGTCGGCGCGGTGAGTATTCAACATCAGGCGCTGCCGAGTTGTCTTGTCGATAAACTTGGTGCGCTCGACTATCTGTTCGTCAGCTCAAAACCCTTTGCCGAAAAATATTTCCCTAACGGCGTAACGCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTG > NC_000913/3060166‑3060405
|
cgAAGTGGTCGGCGCGGTGAGTATTCAACATCAGGCGCTGCCGAGTTGTCTTGTCGATAAACTTGGTGCGCTCGACTATCTGTTCGTCAGCTCAAAACCCTTTGCCGAAAAATATTTCCCTAACGGCGTAACTCGTTCgg < 2:275139/140‑1 (MQ=255)
gTCGGCGCGGTGAGTATTCAACATCAGGCGCTGCCGAGTTGTCTTGTCGATAAACTTGGTGCGCTCGACTATCTGTTCGTCAGCTCAAAACCCTTTGCCGAAAAATATTTCCCTAACGGCGTAACTCGTTCGGCATTACt > 1:504202/1‑140 (MQ=255)
cgcgGTGAGTATTCAACATCAGGCGCTGCCGAGTTGTCTTGTCGATAAACTTGGTGCGCTCGACTATCTGTTCGTCAGCTCAAAACCCTTTGCCGAAAAATATTTCCCTAACGGCGTAACTCGTTCGGCATTACTGAAAg > 2:577510/1‑140 (MQ=255)
cgcTGCCGAGTTGTCTTGTCGATAAACTTGGTGCGCTCGACTATCTGTTCGTCAGCTCAAAACCCTTTGCCGAAAAATATTTCCCTAACGGCGTAACTCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCAt < 2:58550/140‑1 (MQ=255)
ttgtcttgtcGATAAACTTGGTGCGCTCGACTATCTGTTCGTCAGCTCAAAACCCTTTGCCGAAAAATATTTCCCTAACGGCGTAACTCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGata < 2:514078/140‑1 (MQ=255)
aaaCTTGGTGCGCTCGACTATCTGTTCGTCAGCTCAAAACCCTTTGCCGAAAAATATTTCCCTAACGGCGTAACTCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCtt > 2:211912/1‑140 (MQ=255)
aCTATCTGTTCGTCAGCTCAAAACCCTTTGCCGAAAAATATTTCCCTAACGGCGTAACTCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTc < 1:149435/140‑1 (MQ=255)
tCTGTTCGTCAGCTCAAAACCCTTTGCCGAAAAATATTTCCCTAACGGCGTAACTCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATc > 1:157325/1‑140 (MQ=255)
tCTGTTCGTCAGCTCAAAACCCTTTGCCGAAAAATATTTCCCTAACGGCGTAACTCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATc < 1:211912/140‑1 (MQ=255)
tCGTCAGCTCAAAACCCTTTGCCGAAAAATATTTCCCTAACGGCGTAACTCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCt > 2:160792/1‑140 (MQ=255)
aGCTCAAAACCCTTTGCCGAAAAATATTTCCCTAACGGCGTAACTCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAgg < 2:357649/140‑1 (MQ=255)
cccTTTGCCGAAAAATATTTCCCTAACGGCGTAACTCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGcc < 1:172261/140‑1 (MQ=255)
tttGCCGAAAAATATTTCCCTAACGGCGTAACTCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTg > 1:542687/1‑140 (MQ=255)
|
CGAAGTGGTCGGCGCGGTGAGTATTCAACATCAGGCGCTGCCGAGTTGTCTTGTCGATAAACTTGGTGCGCTCGACTATCTGTTCGTCAGCTCAAAACCCTTTGCCGAAAAATATTTCCCTAACGGCGTAACGCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTG > NC_000913/3060166‑3060405
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
