Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F73 I1 R1 26 74.0 2563470 99.3% 2545525 139.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,400,336 C→A R17R (CGG→AGG)  hfq → RNA‑binding protein Hfq

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,400,3360CA98.9% 330.5 / ‑2.7 93R17R (CGG→AGG) hfqRNA‑binding protein Hfq
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base A (48/43);  total (48/45)
Fisher's exact test for biased strand distribution p-value = 4.78e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.42e-01

GAATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACT  >  NC_000913/4400201‑4400470
                                                                                                                                       |                                                                                                                                      
gAATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGa                                                                                                                                    <  1:665383/140‑1 (MQ=255)
       tACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGtt                                                                                                                             >  2:657937/1‑140 (MQ=255)
       tACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGtt                                                                                                                             >  2:1085382/1‑140 (MQ=255)
            ttGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATGAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGt                                                                                                                        >  1:16487/1‑140 (MQ=255)
            ttGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGt                                                                                                                        <  1:413893/140‑1 (MQ=255)
            ttGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGt                                                                                                                        >  2:839183/1‑140 (MQ=255)
            ttGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGt                                                                                                                        >  2:690030/1‑140 (MQ=255)
            ttGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGt                                                                                                                        >  2:653964/1‑140 (MQ=255)
            ttGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGt                                                                                                                        >  1:637822/1‑140 (MQ=255)
            ttGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGt                                                                                                                        >  2:1205573/1‑140 (MQ=255)
            ttGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGt                                                                                                                        <  1:976265/140‑1 (MQ=255)
               agaCGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTc                                                                                                                     >  2:532042/1‑140 (MQ=255)
               agaCGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTc                                                                                                                     >  1:289808/1‑140 (MQ=255)
                 aCGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCta                                                                                                                   >  2:1251682/1‑140 (MQ=255)
                 aCGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCta                                                                                                                   >  2:937849/1‑140 (MQ=255)
                   gTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATGAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCtatt                                                                                                                 <  2:16487/140‑1 (MQ=255)
                    tATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCtattt                                                                                                                >  2:604146/1‑140 (MQ=255)
                    tATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCtattt                                                                                                                >  1:428647/1‑140 (MQ=255)
                      tCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCtatttat                                                                                                              >  1:690517/1‑140 (MQ=255)
                      tCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCtatttat                                                                                                              >  1:1046834/1‑140 (MQ=255)
                         tGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTg                                                                                                           <  2:1008893/140‑1 (MQ=255)
                         tGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTg                                                                                                           <  2:560569/140‑1 (MQ=255)
                              aaTTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGTTCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGaa                                                                                                      <  2:595823/140‑1 (MQ=255)
                              aaTTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGaa                                                                                                      <  1:839183/140‑1 (MQ=255)
                              aaTTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGaa                                                                                                      <  1:552711/140‑1 (MQ=255)
                              aaTTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGaa                                                                                                      <  2:893449/140‑1 (MQ=255)
                              aaTTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACCTGTTCCAGTTTCTATTTATTTGGTGaa                                                                                                      <  2:835195/140‑1 (MQ=255)
                               aTTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAAt                                                                                                     >  2:985250/1‑140 (MQ=255)
                                                 ggTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGT‑AGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGc                                                                                  <  2:524301/140‑1 (MQ=255)
                                                  gTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGc                                                                                  <  1:985250/140‑1 (MQ=255)
                                                   ttCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCa                                                                                 >  2:1075184/1‑140 (MQ=255)
                                                         gTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGa                                                                           <  2:954791/140‑1 (MQ=255)
                                                         gTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGa                                                                           <  1:937849/140‑1 (MQ=255)
                                                            cAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTc                                                                        >  1:195422/1‑140 (MQ=255)
                                                            cAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTc                                                                        >  2:1148810/1‑140 (MQ=255)
                                                                  aGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGa                                                                  >  2:945705/1‑140 (MQ=255)
                                                                  aGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGa                                                                  >  1:93791/1‑140 (MQ=255)
                                                                  aGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGa                                                                  >  1:858227/1‑140 (MQ=255)
                                                                  aGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGa                                                                  >  1:460226/1‑140 (MQ=255)
                                                                  aGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGa                                                                  >  1:318686/1‑140 (MQ=255)
                                                                   gCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGAt                                                                 <  2:389555/140‑1 (MQ=255)
                                                                   gCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGAt                                                                 <  1:757566/140‑1 (MQ=255)
                                                                   gCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGAt                                                                 <  1:737812/140‑1 (MQ=255)
                                                                   gCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGAt                                                                 <  1:653970/140‑1 (MQ=255)
                                                                   gCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGAt                                                                 <  1:276371/140‑1 (MQ=255)
                                                                   gCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGACCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGAt                                                                 <  2:637822/140‑1 (MQ=255)
                                                                    cATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGGTCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATc                                                                <  2:68383/140‑1 (MQ=255)
                                                                    cATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATc                                                                >  2:160352/1‑140 (MQ=255)
                                                                    cATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATc                                                                <  2:858227/140‑1 (MQ=255)
                                                                    cATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATc                                                                >  1:210880/1‑140 (MQ=255)
                                                                     atatAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCa                                                               <  2:428647/140‑1 (MQ=255)
                                                                     atatAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCa                                                               <  1:532042/140‑1 (MQ=255)
                                                                        taAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGtt                                                            >  2:173443/1‑140 (MQ=255)
                                                                             aaaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGa                                                       >  2:532467/1‑140 (MQ=255)
                                                                             aaaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGa                                                       >  1:159952/1‑140 (MQ=255)
                                                                              aaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGAt                                                      >  2:594057/1‑140 (MQ=255)
                                                                              aaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGAt                                                      >  1:672183/1‑140 (MQ=255)
                                                                                agagagAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATcc                                                    <  2:256144/140‑1 (MQ=255)
                                                                                agagagAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATcc                                                    <  2:318686/140‑1 (MQ=255)
                                                                                    agaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGtt                                                <  1:1251682/140‑1 (MQ=255)
                                                                                      aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGa                                              >  1:266057/1‑140 (MQ=255)
                                                                                      aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGa                                              >  1:1021503/1‑140 (MQ=255)
                                                                                                gggCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGt                                    >  1:805333/1‑140 (MQ=255)
                                                                                                gggCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGt                                    <  2:289808/140‑1 (MQ=255)
                                                                                                 ggCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTc                                   <  2:672183/140‑1 (MQ=255)
                                                                                                  gCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCa                                  >  1:735636/1‑140 (MQ=255)
                                                                                                    aaTCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGc                                >  2:52065/1‑140 (MQ=255)
                                                                                                    aaTCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGc                                >  1:2811/1‑140 (MQ=255)
                                                                                                     aTCTTTACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGcc                               >  1:850681/1‑140 (MQ=255)
                                                                                                        tttACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGa                            <  1:960762/140‑1 (MQ=255)
                                                                                                        tttACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGa                            <  1:1205573/140‑1 (MQ=255)
                                                                                                        tttACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGa                            <  2:690517/140‑1 (MQ=255)
                                                                                                        tttACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGa                            <  2:321935/140‑1 (MQ=255)
                                                                                                        tttACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGa                            <  1:653964/140‑1 (MQ=255)
                                                                                                        tttACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGa                            <  2:1166977/140‑1 (MQ=255)
                                                                                                        tttACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGa                            <  1:657937/140‑1 (MQ=255)
                                                                                                        tttACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGa                            <  1:160352/140‑1 (MQ=255)
                                                                                                        tttACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGa                            <  2:383211/140‑1 (MQ=255)
                                                                                                          tACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCGGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATg                          >  2:497596/1‑140 (MQ=255)
                                                                                                          tACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAg                                 <  2:602329/133‑1 (MQ=255)
                                                                                                          tACAAGATCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAg                                 >  1:602329/1‑133 (MQ=255)
                                                                                                                aTCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTAc                    >  1:1111610/1‑140 (MQ=255)
                                                                                                                aTCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTAc                    >  1:653516/1‑140 (MQ=255)
                                                                                                                aTCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTAc                    >  1:802525/1‑140 (MQ=255)
                                                                                                                aTCCGTTCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTAc                    >  2:338707/1‑140 (MQ=255)
                                                                                                                      tCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCAc              <  1:52065/140‑1 (MQ=255)
                                                                                                                      tCCTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCAc              <  1:338707/140‑1 (MQ=255)
                                                                                                                        cTGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCAcgc            <  2:1111610/140‑1 (MQ=255)
                                                                                                                         tGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCAcgcg           <  1:1148810/140‑1 (MQ=255)
                                                                                                                         tGAACGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCAcgcg           <  1:690030/140‑1 (MQ=255)
                                                                                                                           aaCGCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGAt         >  1:1118160/1‑140 (MQ=255)
                                                                                                                              gCACTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTc      <  2:735636/140‑1 (MQ=255)
                                                                                                                                aCTGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTACGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTa    >  1:794735/1‑140 (MQ=255)
                                                                                                                                  tGCGTAGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACt  >  1:26153/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                      
GAATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACT  >  NC_000913/4400201‑4400470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A