Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F73 I1 R1 27 139.9 4778260 99.2% 4740033 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,321,261 G→T R146S (CGC→AGC)  phnG ← carbon‑phosphorus lyase core complex subunit PhnG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,321,2610GT100.0% 332.5 / NA 93R146S (CGC→AGC) phnGcarbon‑phosphorus lyase core complex subunit PhnG
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (53/40);  total (53/40)

GCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCATCA  >  NC_000913/4321124‑4321395
                                                                                                                                         |                                                                                                                                      
gCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTaa                                                                                                                                      >  1:2296493/1‑140 (MQ=255)
gCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTaa                                                                                                                                      >  1:2042086/1‑140 (MQ=255)
gCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTaa                                                                                                                                      >  1:1207910/1‑140 (MQ=255)
gCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACCGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTaa                                                                                                                                      >  1:1933802/1‑140 (MQ=255)
        cgTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTa                                                                                                                              >  1:1090260/1‑140 (MQ=255)
        cgTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTa                                                                                                                              >  2:1828756/1‑140 (MQ=255)
                cTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTc                                                                                                                      >  2:68321/1‑140 (MQ=255)
                   atgaaGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAAc                                                                                                                                     >  2:768459/5‑122 (MQ=255)
                   aTGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGAc                                                                                                                   >  1:2057528/1‑140 (MQ=255)
                   aTGAAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAAc                                                                                                                                     <  1:768459/122‑1 (MQ=255)
                    tGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGAcc                                                                                                                  <  2:2042086/140‑1 (MQ=255)
                    tGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGAcc                                                                                                                  <  2:1207910/140‑1 (MQ=255)
                        gggCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGc                                                                                                              >  1:882212/1‑140 (MQ=255)
                         ggCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCt                                                                                                             >  2:1623783/1‑140 (MQ=255)
                         ggCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCt                                                                                                             >  2:2291839/1‑140 (MQ=255)
                           cGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTgg                                                                                                           >  1:2175258/1‑140 (MQ=255)
                           cGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTgg                                                                                                           >  1:308047/1‑140 (MQ=255)
                             aCAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATTGTAAAGAAGTCGACCCGGCTGGCg                                                                                                         >  2:2024277/1‑140 (MQ=255)
                             aCAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATTGTAAAGAAGTCGACCCGGCTGGCg                                                                                                         >  2:342633/1‑140 (MQ=255)
                             aCAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCg                                                                                                         <  1:1823177/140‑1 (MQ=255)
                              cAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGt                                                                                                        >  1:708288/1‑140 (MQ=255)
                               aaTCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGtt                                                                                                       <  1:663680/140‑1 (MQ=255)
                                   aCGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACt                                                                                                   <  1:1828756/140‑1 (MQ=255)
                                   aCGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACt                                                                                                   <  1:847374/140‑1 (MQ=255)
                                           ctcgctcATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTg                                                                                           >  2:921667/1‑140 (MQ=255)
                                           ctcgctcATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTg                                                                                           >  2:1043318/1‑140 (MQ=255)
                                           ctcgctcATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTg                                                                                           >  2:1374646/1‑140 (MQ=255)
                                           ctcgctcATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTg                                                                                           >  2:179513/1‑140 (MQ=255)
                                              gctcATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCg                                                                                        <  1:1812676/140‑1 (MQ=255)
                                                   tGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCgg                                                                                   >  1:244863/1‑140 (MQ=255)
                                                     gCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCa                                                                                 >  2:100440/1‑140 (MQ=255)
                                                       cTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAAt                                                                               <  2:882212/140‑1 (MQ=255)
                                                          tAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGc                                                                             >  1:527969/1‑139 (MQ=255)
                                                          tAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGc                                                                             <  2:527969/139‑1 (MQ=255)
                                                          tAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCg                                                                            >  2:2179629/1‑140 (MQ=255)
                                                          tAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCg                                                                            >  1:2054328/1‑140 (MQ=255)
                                                          tAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCg                                                                            >  2:46324/1‑140 (MQ=255)
                                                           aaCAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGt                                                                           <  1:1320776/140‑1 (MQ=255)
                                                           aaCAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGt                                                                           <  2:1933802/140‑1 (MQ=255)
                                                                  gacgaAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATAc                                                                    <  2:2296493/140‑1 (MQ=255)
                                                                     gaAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGt                                                                 >  2:1557457/1‑140 (MQ=255)
                                                                       aaaCTGTGCTGGGCAGCCTGCACGGGAAGGATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTATCCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCa                                                               <  1:1026472/140‑1 (MQ=255)
                                                                          cTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATTGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCg                                                            <  1:2024277/140‑1 (MQ=255)
                                                                          cTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATTGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCg                                                            <  1:342633/140‑1 (MQ=255)
                                                                          cTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCg                                                            <  1:100440/140‑1 (MQ=255)
                                                                              gCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCa                                                        >  2:1197387/1‑140 (MQ=255)
                                                                                  ggCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCgg                                                    <  1:2291839/140‑1 (MQ=255)
                                                                                  ggCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCgg                                                    >  2:1533621/1‑140 (MQ=255)
                                                                                  ggCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCgg                                                    >  1:1973962/1‑140 (MQ=255)
                                                                                  ggCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCgg                                                    <  2:308047/140‑1 (MQ=255)
                                                                                      tCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCa                                                <  1:1043318/140‑1 (MQ=255)
                                                                                       ccTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCaa                                               >  2:1700495/1‑140 (MQ=255)
                                                                                        cTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAAt                                              <  1:179513/140‑1 (MQ=255)
                                                                                         tGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATa                                             <  2:244863/140‑1 (MQ=255)
                                                                                            aCGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCg                                                            <  1:1690813/122‑1 (MQ=255)
                                                                                            aCGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCg                                                            >  2:1690813/1‑122 (MQ=255)
                                                                                            aCGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAgg                                          >  2:1286041/1‑140 (MQ=255)
                                                                                                   gCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTg                                   >  1:1227971/1‑140 (MQ=255)
                                                                                                    cATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGa                                  <  1:921667/140‑1 (MQ=255)
                                                                                                      tAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATa                                <  2:16153/140‑1 (MQ=255)
                                                                                                        aaaGCGGTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAg                              >  1:1169569/1‑140 (MQ=255)
                                                                                                              gTTTCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGa                        >  1:2043242/1‑140 (MQ=255)
                                                                                                                ttCCAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaaa                      <  2:1471083/140‑1 (MQ=255)
                                                                                                                  ccAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGt                    <  2:1903866/140‑1 (MQ=255)
                                                                                                                  ccAGGGTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGt                    <  2:305270/140‑1 (MQ=255)
                                                                                                                     gggTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGc                 <  1:1521571/140‑1 (MQ=255)
                                                                                                                      ggTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCg                <  2:1169569/140‑1 (MQ=255)
                                                                                                                      ggTCATGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCg                >  2:2140379/1‑140 (MQ=255)
                                                                                                                          aTGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGAt            <  1:313757/140‑1 (MQ=255)
                                                                                                                           tGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGa                        >  2:1233144/1‑127 (MQ=255)
                                                                                                                           tGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGa                        <  1:1233144/127‑1 (MQ=255)
                                                                                                                           tGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCga               <  2:762701/136‑1 (MQ=255)
                                                                                                                           tGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCga               >  1:762701/1‑136 (MQ=255)
                                                                                                                           tGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGAtt           >  2:642045/1‑140 (MQ=255)
                                                                                                                           tGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGAtt           >  1:576128/1‑140 (MQ=255)
                                                                                                                           tGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGAtt           >  1:2263320/1‑140 (MQ=255)
                                                                                                                           tGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGAtt           >  2:433562/1‑140 (MQ=255)
                                                                                                                           tGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGAtt           >  1:496365/1‑140 (MQ=255)
                                                                                                                           tGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGAtt           >  1:743525/1‑140 (MQ=255)
                                                                                                                           tGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGAtt           >  2:1993227/1‑140 (MQ=255)
                                                                                                                           tGCGTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGAtt           >  2:1454160/1‑140 (MQ=255)
                                                                                                                              gTTGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATtgct        <  2:2043242/140‑1 (MQ=255)
                                                                                                                                tGTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATtgctgc      >  2:1835377/1‑140 (MQ=255)
                                                                                                                                 gTCTCCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCa     >  2:1506995/1‑140 (MQ=255)
                                                                                                                                  tctcCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCAt    <  1:1993227/140‑1 (MQ=255)
                                                                                                                                  tctcCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCAt    >  1:1957319/1‑140 (MQ=255)
                                                                                                                                  tctcCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCAt    >  2:1101350/1‑140 (MQ=255)
                                                                                                                                  tctcCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCAt    <  1:1101350/140‑1 (MQ=255)
                                                                                                                                  tctcCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCAt    >  2:1423163/1‑140 (MQ=255)
                                                                                                                                   ctcCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCATc   <  2:2057528/140‑1 (MQ=255)
                                                                                                                                    tcCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCATCa  <  1:68321/140‑1 (MQ=255)
                                                                                                                                    tcCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCATCa  <  1:1374646/140‑1 (MQ=255)
                                                                                                                                    tcCGCTAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCATCa  <  1:1557457/140‑1 (MQ=255)
                                                                                                                                    cccGCTAACCATCGTAAAGAAGTCGACCCGGTTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCATCa  <  2:759828/139‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                      
GCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCATCA  >  NC_000913/4321124‑4321395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A