Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F28 I1 R1
|
146 |
75.3 |
2562504 |
98.6% |
2526628 |
139.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,883,098 |
(C)6→7 |
coding (1041/1509 nt) |
casA ← |
type I‑E CRISPR system Cascade subunit CasA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,883,092 | 1 | . | C | 97.6%
| 306.7
/ ‑0.3
| 84 | coding (1047/1509 nt) | casA | type I‑E CRISPR system Cascade subunit CasA |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base C (43/39); total (45/39) |
| Fisher's exact test for biased strand distribution p-value = 4.97e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.07e-01 |
GCCTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATAT‑CCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCG > NC_000913/2882955‑2883230
|
gCCTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATAT‑cc < 1:209564/140‑1 (MQ=255)
gCCTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATAT‑cc < 1:892974/140‑1 (MQ=255)
gCCTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATAT‑cc < 2:163164/140‑1 (MQ=255)
gCCTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATAT‑cc < 2:1077012/140‑1 (MQ=255)
ccTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATAT‑ccc > 1:727732/1‑140 (MQ=255)
ccTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATAT‑ccc > 1:637598/1‑140 (MQ=255)
cTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATAT‑cccc > 2:955992/1‑140 (MQ=255)
cTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATAT‑cccc > 1:1187685/1‑140 (MQ=255)
cTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATAT‑cccc > 2:326072/1‑140 (MQ=255)
tGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATAT‑cccccc > 2:903006/1‑140 (MQ=255)
tGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATAT‑cccccc > 2:454662/1‑140 (MQ=255)
cGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATAT‑ccccccca > 2:746213/1‑138 (MQ=255)
aGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAAt < 1:326072/140‑1 (MQ=255)
aGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAAt < 1:315557/140‑1 (MQ=255)
cTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCaa < 1:879828/140‑1 (MQ=255)
ttttATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTc > 1:1242388/1‑140 (MQ=255)
ttttATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATAT‑cc > 1:226663/1‑124 (MQ=255)
ttttATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATAT‑cc < 2:226663/124‑1 (MQ=255)
ttATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCaa < 1:746213/140‑1 (MQ=255)
aaCCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTg > 2:490922/1‑140 (MQ=255)
aaCCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTg > 2:624046/1‑140 (MQ=255)
cAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTgcgg < 1:624046/140‑1 (MQ=255)
cAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTgcgg < 1:903006/140‑1 (MQ=255)
aaCAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTgcggc < 2:1036895/140‑1 (MQ=255)
aCAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTgcggcg < 2:45992/140‑1 (MQ=255)
cAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGgcgc > 1:793991/1‑140 (MQ=255)
gTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCaa < 1:812286/140‑1 (MQ=255)
aCTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCaa < 2:394554/137‑1 (MQ=255)
aCTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCaa > 1:394554/1‑137 (MQ=255)
aCTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAatat > 1:1022245/1‑140 (MQ=255)
aCTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAatat > 1:1223678/1‑140 (MQ=255)
tATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATAttt < 2:1022245/140‑1 (MQ=255)
gTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAAt < 1:454662/140‑1 (MQ=255)
gTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAAt < 2:1242388/140‑1 (MQ=255)
cacaTTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTc > 1:183132/1‑140 (MQ=255)
ccGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAAccg > 1:1279465/1‑140 (MQ=255)
gCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCAcgcg > 2:1267133/1‑140 (MQ=255)
gCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCAcgcg > 1:642717/1‑140 (MQ=255)
gCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCAcgcg > 2:23865/1‑140 (MQ=255)
gCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCAcgcg > 2:533219/1‑140 (MQ=255)
gCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCAcgcg > 1:413897/1‑140 (MQ=255)
gCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCAcgcg > 1:119234/1‑140 (MQ=255)
aCCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGAtt > 2:902873/1‑140 (MQ=255)
aCCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGAtt < 1:490922/140‑1 (MQ=255)
cccTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTc > 1:266376/1‑140 (MQ=255)
cccTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTc > 2:846528/1‑140 (MQ=255)
tGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCcat > 1:682612/1‑140 (MQ=255)
aTTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGa > 2:986231/1‑131 (MQ=255)
aTTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGa < 1:986231/131‑1 (MQ=255)
aaCATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAATCGCCGCCACGCGATTTCcattttcat < 2:637598/140‑1 (MQ=255)
aCATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCcattttcatt < 2:665094/140‑1 (MQ=255)
cATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCcattttcattt > 1:1016314/1‑140 (MQ=255)
cAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGa > 2:874073/1‑140 (MQ=255)
cAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGa > 2:724238/1‑140 (MQ=255)
cAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGa > 2:769972/1‑140 (MQ=255)
aaCACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCcattttcatttttaa < 2:266376/140‑4 (MQ=255)
aaCACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGaa < 2:793991/140‑1 (MQ=255)
aaCACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGaa < 1:1197278/140‑1 (MQ=255)
aaCACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGaa < 2:119234/140‑1 (MQ=255)
cacaTCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGaata < 2:682612/140‑1 (MQ=255)
atcatGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATc > 2:585515/1‑140 (MQ=255)
catGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCtt > 1:1171378/1‑140 (MQ=255)
atGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTa < 1:1146216/140‑1 (MQ=255)
gCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTAc < 2:1187685/140‑1 (MQ=255)
cGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATc > 2:1268411/1‑130 (MQ=255)
cGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATc < 1:1268411/130‑1 (MQ=255)
cGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACca > 2:995028/1‑140 (MQ=255)
cGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACca > 2:897052/1‑140 (MQ=255)
ttCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGaa < 2:1262694/123‑1 (MQ=255)
ttCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGaa > 1:1262694/1‑123 (MQ=255)
ttCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACcaca > 1:979431/1‑140 (MQ=255)
ttCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACcaca > 1:917800/1‑140 (MQ=255)
ttCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACcaca > 2:716717/1‑140 (MQ=255)
ttCAAGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACcaca > 2:691996/1‑140 (MQ=255)
ttCAAGAATAGATGCTTGATTATTACGATAT‑CCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACaa > 2:256824/1‑140 (MQ=255)
aaGAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACt < 2:642717/140‑1 (MQ=255)
gAATAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCg < 2:979431/140‑1 (MQ=255)
tAGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCt < 2:727732/140‑1 (MQ=255)
aGATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTg < 2:917800/140‑1 (MQ=255)
gATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGa > 2:112886/1‑140 (MQ=255)
gATGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGa > 1:760893/1‑140 (MQ=255)
aTGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGAt > 2:516743/1‑140 (MQ=255)
aTGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGAt > 1:1252096/1‑140 (MQ=255)
tGCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGAtt < 1:1267133/140‑1 (MQ=255)
gCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGAttt < 1:533219/140‑1 (MQ=255)
gCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGAttt < 1:112886/140‑1 (MQ=255)
gCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGAttt < 1:691996/140‑1 (MQ=255)
gCTTGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGAttt > 2:292368/1‑140 (MQ=255)
ttGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTtgt < 1:615927/140‑1 (MQ=255)
tGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTtgtg > 1:764644/1‑140 (MQ=255)
tGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTtgtg > 1:195283/1‑140 (MQ=255)
tGATTATTACGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTtgtg > 1:1070088/1‑140 (MQ=255)
tGATTATTACGATAT‑CCCCCCAATACTCAATTCAGGAGGCCTTTGCGGCGCAATTTTTCTGAATTGATTCACAACCGCCGCCACGCGTTTTCAATTTTCTTTTGGAATAATCTTATCTACAACAACTTGGCGGATTtgtt > 2:850255/1‑139 (MQ=255)
attaCGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGAt > 2:309033/1‑130 (MQ=255)
attaCGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGAt < 1:309033/130‑1 (MQ=255)
ttaCGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCatg < 2:760893/140‑1 (MQ=255)
tccGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCatga < 1:48960/138‑1 (MQ=255)
taCGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCatga < 1:874073/140‑1 (MQ=255)
taCGATATCCCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCatga < 1:585515/140‑1 (MQ=255)
at‑CCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCg < 1:256824/140‑1 (MQ=255)
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GCCTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATAT‑CCCCCC‑ATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCG > NC_000913/2882955‑2883230
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
