Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	146	75.3	2562504	98.6%	2526628	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,170,984	G→A	W167* (TGG→TGA)	qseC →	sensory histidine kinase QseC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,170,984	0	G	A	100.0%	320.3 / NA	89	W167* (TGG→TGA)	qseC	sensory histidine kinase QseC
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (39/50); total (39/50)

GGTCGGTGAAGACGATCCTTGGCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTA  >  NC_000913/3170849‑3171119

ggTCGGTGAAGACGATCCTTGGCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTgg                                                                                                                                     >  1:1060622/1‑140 (MQ=255)

   cGGTGAAGACGATCCTTGGCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCg                                                                                                                                  <  2:134406/140‑1 (MQ=255)

   cGGTGAAGACGATCCTTGGCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCg                                                                                                                                  <  1:457401/140‑1 (MQ=255)

    ggTGAAGACGATCCTTGGCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGc                                                                                                                                 >  1:691620/1‑140 (MQ=255)

      tGAAGACGATCCTTGGCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCAc                                                                                                                               >  1:1089071/1‑140 (MQ=255)

       gAAGACGATCCTTGGCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACt                                                                                                                              <  2:691620/140‑1 (MQ=255)

        aaGACGATCCTTGGCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTg                                                                                                                             >  1:752722/1‑140 (MQ=255)

        aaGACGATCCTTGGCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTg                                                                                                                             <  2:766115/140‑1 (MQ=255)

           aCGATCCTTGGCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCg                                                                                                                          >  1:798671/1‑140 (MQ=255)

            cGATCCTTGGCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGa                                                                                                                         <  2:1190000/140‑1 (MQ=255)

            cGATCCTTGGCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGa                                                                                                                         <  1:840663/140‑1 (MQ=255)

            cGATCCTTGGCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGa                                                                                                                         <  1:272036/140‑1 (MQ=255)

            cGATCCTTGGCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGa                                                                                                                         <  2:41430/140‑1 (MQ=255)

                ccTTGGCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGa                                                                                                                         >  2:518038/1‑136 (MQ=255)

                ccTTGGCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGa                                                                                                                         <  1:518038/136‑1 (MQ=255)

                ccTTGGCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTAt                                                                                                                     >  1:430597/1‑140 (MQ=255)

                ccTTGGCGTTTTGTCTGGATGACCTCACCTGATGGC‑AATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATg                                                                                                                    >  1:484067/1‑140 (MQ=255)

                    ggCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTa                                                                                                                 <  1:970942/140‑1 (MQ=255)

                    ggCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTa                                                                                                                 >  1:1143261/1‑140 (MQ=255)

                    ggCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTa                                                                                                                 <  2:747329/140‑1 (MQ=255)

                    ggCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTa                                                                                                                 <  1:106881/140‑1 (MQ=255)

                    ggCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTa                                                                                                                 <  1:617502/140‑1 (MQ=255)

                     gCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTg                                                                                                                             <  2:808311/127‑1 (MQ=255)

                     gCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTg                                                                                                                             >  1:808311/1‑127 (MQ=255)

                     gCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTaa                                                                                                                >  2:146420/1‑140 (MQ=255)

                      cGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAat                                                                                                               <  2:121577/140‑1 (MQ=255)

                         tttGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAatcat                                                                                                            <  2:1089071/140‑1 (MQ=255)

                          ttGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAatcatc                                                                                                           <  1:460391/140‑1 (MQ=255)

                            gTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATcatcat                                                                                                         <  1:393734/140‑1 (MQ=255)

                            gTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATcatcat                                                                                                         <  1:820456/140‑1 (MQ=255)

                              cTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCatga                                                                                                       <  1:146420/140‑1 (MQ=255)

                              cTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCatga                                                                                                       <  2:245895/140‑1 (MQ=255)

                                 gATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATgg                                                                                                    <  2:686762/140‑1 (MQ=255)

                                 gATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATgg                                                                                                    <  2:614277/140‑1 (MQ=255)

                                 gATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATgg                                                                                                    <  2:322705/140‑1 (MQ=255)

                                  aTGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGt                                                                                                   >  1:424039/1‑140 (MQ=255)

                                     aCCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGtact                                                                                                >  1:929524/1‑140 (MQ=255)

                                         cACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTg                                                                                            >  1:196925/1‑140 (MQ=255)

                                           ccTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTggg                                                                                          <  2:650014/140‑1 (MQ=255)

                                               aTGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGt                                                                                      >  1:549302/1‑140 (MQ=255)

                                               aTGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGt                                                                                      >  1:1007811/1‑140 (MQ=255)

                                                 ggCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGa                                                                                    >  2:947783/1‑140 (MQ=255)

                                                 ggCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGa                                                                                    >  2:222193/1‑140 (MQ=255)

                                                      atatCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTcg                                                                               <  1:960328/140‑1 (MQ=255)

                                                        atCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTcgcg                                                                             <  2:1258445/140‑1 (MQ=255)

                                                                gttgttGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGaa                                                                     <  2:1143261/140‑1 (MQ=255)

                                                                 ttgttgGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAAc                                                                    >  2:373821/1‑140 (MQ=255)

                                                                 ttgttgGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAAc                                                                    >  2:206079/1‑140 (MQ=255)

                                                                      ggCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACt                                                               <  2:929524/140‑1 (MQ=255)

                                                                       gCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTg                                                              >  1:1264933/1‑140 (MQ=255)

                                                                          aGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGgcg                                                           <  2:798671/140‑1 (MQ=255)

                                                                            gAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCt                                                         <  2:354258/140‑1 (MQ=255)

                                                                              aTGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTgg                                                       <  2:404407/140‑1 (MQ=255)

                                                                                gggAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCa                                                     <  1:947783/140‑1 (MQ=255)

                                                                                gggAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCa                                                     <  1:681640/140‑1 (MQ=255)

                                                                                gggAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCa                                                     <  1:483435/140‑1 (MQ=255)

                                                                                gggAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCa                                                     <  1:206079/140‑1 (MQ=255)

                                                                                 ggAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCAc                                                    >  1:187160/1‑140 (MQ=255)

                                                                                  gAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACt                                                   <  2:1158768/140‑1 (MQ=255)

                                                                                      aCCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTgg                                                       >  2:1141813/1‑132 (MQ=255)

                                                                                      aCCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTgg                                                       <  1:1141813/132‑1 (MQ=255)

                                                                                      aCCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGt                                               >  2:5789/1‑140 (MQ=255)

                                                                                      aCCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGt                                               <  2:1037654/140‑1 (MQ=255)

                                                                                      aCCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGt                                               <  2:187160/140‑1 (MQ=255)

                                                                                          tGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGc                                           >  1:984843/1‑140 (MQ=255)

                                                                                          tGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGc                                           >  2:658409/1‑140 (MQ=255)

                                                                                          tGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGc                                           >  2:282489/1‑140 (MQ=255)

                                                                                           gAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCg                                          <  2:484067/140‑1 (MQ=255)

                                                                                           gAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCg                                          >  2:702160/1‑140 (MQ=255)

                                                                                            aaGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTGCTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGt                                         >  2:864329/1‑140 (MQ=255)

                                                                                            aaGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGt                                         >  1:817801/1‑140 (MQ=255)

                                                                                                 aTGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTTCTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGAccc                                    >  2:337895/1‑140 (MQ=255)

                                                                                                   ggCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTg                                  >  2:1261916/1‑140 (MQ=255)

                                                                                                   ggCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTg                                  >  1:844407/1‑140 (MQ=255)

                                                                                                      gcTGGCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACt                               >  2:357944/1‑140 (MQ=255)

                                                                                                          gCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGa                           >  1:357487/1‑140 (MQ=255)

                                                                                                          gCGATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGa                           >  1:1162204/1‑140 (MQ=255)

                                                                                                            gATTGTTGCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGaaa                         <  1:1082078/140‑1 (MQ=255)

                                                                                                                 ttgCCGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCa                    <  2:196925/140‑1 (MQ=255)

                                                                                                                    ccGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTa                 >  1:14708/1‑140 (MQ=255)

                                                                                                                    ccGGGCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTa                 >  2:1066533/1‑140 (MQ=255)

                                                                                                                      gggCAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTaaa               <  2:549302/140‑1 (MQ=255)

                                                                                                                         cAATTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAAcgc            <  2:965169/140‑1 (MQ=255)

                                                                                                                           aTTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGa          <  1:222193/140‑1 (MQ=255)

                                                                                                                           aTTGATCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGa          <  1:1066533/140‑1 (MQ=255)

                                                                                                                               aTCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTgg      <  1:357944/140‑1 (MQ=255)

                                                                                                                                tCCCGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGc     <  1:702160/140‑1 (MQ=255)

                                                                                                                                  ccGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGt   >  2:438600/1‑140 (MQ=255)

                                                                                                                                   cGTGACTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTa  <  1:438600/140‑1 (MQ=255)

GGTCGGTGAAGACGATCCTTGGCGTTTTGTCTGGATGACCTCACCTGATGGCAAATATCGCATCGTTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTA  >  NC_000913/3170849‑3171119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A