Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	146	75.3	2562504	98.6%	2526628	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,487,815	A→G	D342G (GAC→GGC)	yhfK →	putative transporter YhfK

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,487,815	0	A	G	100.0%	246.2 / NA	66	D342G (GAC→GGC)	yhfK	putative transporter YhfK
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (32/34); total (32/34)

CGATGGAAAAGCAAATTGGCGCACTGGAAAAAATCGCCCGCCAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGACTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAGCGTTGCCAGCCTGATGGGCA  >  NC_000913/3487680‑3487946

cGATGGAAAAGCAAATTGGCGCACTGGAAAAAATCGCCCGCCAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTa                                                                                                                                 <  2:461790/140‑1 (MQ=255)

cGATGGAAAAGCAAATTGGCGCACTGGAAAAAATCGCCCGCCAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTa                                                                                                                                 <  1:299250/140‑1 (MQ=255)

  aTGGAAAGGCAAATTGGCGCACTGGAAAAAATCGCCCGCCAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACt                                                                                                                               <  1:752717/140‑1 (MQ=255)

  aTGGAAAAGCAAATTGGCGCACTGGAAAAAATCGCCCGCCAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACt                                                                                                                               <  2:551990/140‑1 (MQ=255)

     gAAAAGCAAATTGGCGCACTGGAAAAAATCGCCCGCCAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGc                                                                                                                            >  1:115259/1‑140 (MQ=255)

       aaaGCCAATTGGCGCACTGGAAAAAAACGCCCGCCAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACTCAAAAACCGCTCTACGCCCGTGGCTTACTGGGCg                                                                                                                          <  2:1133778/140‑1 (MQ=255)

          gCAAATTGGCGCACTGGAAAAAATCGCCCGCCAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATa                                                                                                                       <  1:806946/140‑1 (MQ=255)

              aTTGGCGCACTGGAAAAAATCGCCCGCCAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACa                                                                                                                   <  1:479451/140‑1 (MQ=255)

              aTTGGCGCACTGGAAAAAATCGCCCGCCAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACa                                                                                                                   <  2:731463/140‑1 (MQ=255)

              aTTGGCGCACTGGAAAAAATCGCCCGCCAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACa                                                                                                                   >  2:581387/1‑140 (MQ=255)

               ttGGCGCACTGGAAAAAATCGCCCGCCAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAg                                                                                                                  <  2:435355/140‑1 (MQ=255)

               ttGGCGCACTGGAAAAAATCGCCCGCCAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAg                                                                                                                  <  1:1210011/140‑1 (MQ=255)

               ttGGCGCACTGGAAAAAATCGCCCGCCAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAg                                                                                                                  >  2:423686/1‑140 (MQ=255)

                     cACTGGAAAAAATCGCCCGCCAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGa                                                                                                            >  2:516030/1‑140 (MQ=255)

                        tGGAAAAAATCGCCCGCCAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATg                                                                                                         >  1:162897/1‑140 (MQ=255)

                          gAAAAAATCGCCCGCCAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGcc                                                                                                       >  2:1260617/1‑140 (MQ=255)

                                    cccgccAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAgcggcg                                                                                                             <  1:581939/124‑1 (MQ=255)

                                    cccgccAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAgcggcg                                                                                                             >  2:581939/1‑124 (MQ=255)

                                    cccgccAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCg                                                                                             >  2:732795/1‑140 (MQ=255)

                                                   aTAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTAt                                                                              <  2:349840/140‑1 (MQ=255)

                                                     aaTCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCt                                                                            <  1:732795/140‑1 (MQ=255)

                                                       tCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTgc                                                                          >  1:83775/1‑139 (MQ=255)

                                                       tCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGAGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGCTATCTGt                                                                          >  1:873746/1‑140 (MQ=255)

                                                            ttGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTa                                                                     >  1:311127/1‑140 (MQ=255)

                                                                 cAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGtc                                                                >  1:54124/1‑140 (MQ=255)

                                                                   aTTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGtctc                                                              <  2:311127/140‑1 (MQ=255)

                                                                         cTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGgcgc                                                        >  2:1191648/1‑140 (MQ=255)

                                                                          tACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCt                                                       >  2:1136807/1‑140 (MQ=255)

                                                                             tGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACg                                                    <  1:516030/140‑1 (MQ=255)

                                                                             tGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACg                                                    <  1:364399/140‑1 (MQ=255)

                                                                              ggCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGc                                                   >  1:1016862/1‑140 (MQ=255)

                                                                               gCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACTGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGTCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACg                                                    <  1:750022/138‑1 (MQ=255)

                                                                               gCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACTGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGTCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACg                                                    >  2:750022/1‑138 (MQ=255)

                                                                               gCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCa                                                  >  2:642433/1‑140 (MQ=255)

                                                                                cATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCaa                                                 <  1:696167/140‑1 (MQ=255)

                                                                                  tttCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATg                                               >  1:1091650/1‑140 (MQ=255)

                                                                                   ttCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGc                                              >  2:730921/1‑140 (MQ=255)

                                                                                   ttCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGc                                              >  1:898905/1‑140 (MQ=255)

                                                                                         cGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGgacg                                        >  1:622078/1‑140 (MQ=255)

                                                                                            aTCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACt                                     <  1:581387/140‑1 (MQ=255)

                                                                                             tCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTc                                    >  1:177389/1‑140 (MQ=255)

                                                                                              cGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCa                                   <  1:1260617/140‑1 (MQ=255)

                                                                                              cGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCa                                   <  1:1191648/140‑1 (MQ=255)

                                                                                              cGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCa                                   <  2:779044/140‑1 (MQ=255)

                                                                                                 ccGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAgtg                                <  1:423686/140‑1 (MQ=255)

                                                                                                  cgcgTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAgtgt                               <  1:1136807/140‑1 (MQ=255)

                                                                                                      tgctgcGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATg                           >  1:105552/1‑140 (MQ=255)

                                                                                                        ctgcGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGtt                         >  2:1045831/1‑140 (MQ=255)

                                                                                                         tgcGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTa                        >  2:319345/1‑140 (MQ=255)

                                                                                                         tgcGCACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTa                        <  1:642433/140‑1 (MQ=255)

                                                                                                           cgcACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAg                      >  2:143054/1‑140 (MQ=255)

                                                                                                           cgcACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAg                      <  1:105846/140‑1 (MQ=255)

                                                                                                           cgcACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAg                      <  1:477622/140‑1 (MQ=255)

                                                                                                             cACCCAAAAACCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAGCg                    >  2:195603/1‑140 (MQ=255)

                                                                                                                   aaaaCCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAGCGTTGCCa              <  2:115259/140‑1 (MQ=255)

                                                                                                                   aaaaCCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAGCGTTGCCa              >  1:858820/1‑140 (MQ=255)

                                                                                                                     aaCCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAGCGTTGCCAGc            <  2:162897/140‑1 (MQ=255)

                                                                                                                     aaCCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAGCGTTGCCAGc            <  2:54124/140‑1 (MQ=255)

                                                                                                                     aaCCGCTCTATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAGCGTTGCCAGc            <  1:730921/140‑1 (MQ=255)

                                                                                                                          ctctATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAGCGTTGCCAGc            <  2:997702/135‑1 (MQ=255)

                                                                                                                          ctctATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAGCGTTGCCAGc            >  1:997702/1‑135 (MQ=255)

                                                                                                                          ctctATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAGCGTTGCCAGCCTGAt       >  1:8013/1‑140 (MQ=255)

                                                                                                                          ctctATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAGCGTTGCCAGCCTGAt       >  2:1249075/1‑140 (MQ=255)

                                                                                                                             tATGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAGCGTTGCCAGCCTGATggg    <  1:505592/140‑1 (MQ=255)

                                                                                                                               tGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAGCGTTGCCAGCCTGATGGGCa  >  1:883105/1‑140 (MQ=255)

                                                                                                                               tGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAGCGTTGCCAGCCTGATGGGCa  <  1:195603/140‑1 (MQ=255)

                                                                                                                               tGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGCCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAGCGTTGCCAGCCTGATGGGCa  <  2:83775/140‑1 (MQ=255)

                                                                                                                               tGCCCGTGGCTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCAGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAGCGTTGCCAGCCTGATGGGCa  >  2:501117/1‑140 (MQ=255)

CGATGGAAAAGCAAATTGGCGCACTGGAAAAAATCGCCCGCCAGCATCCGGATAATCCGGTTGGGCAATTCTGCTACTGGCATTTCAGCCGCATCGCCCGCGTGCTGCGCACCCAAAAACCGCTCTATGCCCGTGACTTACTGGCCGATAAACAGCGGCGAATGCCATTACTTCCGGCGCTGAAAAGTTATCTGTCACTAAAGTCTCCGGCGCTACGCAATGCCGGACGACTCAGTGTGATGTTAAGCGTTGCCAGCCTGATGGGCA  >  NC_000913/3487680‑3487946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A