Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	146	75.3	2562504	98.6%	2526628	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,844,578	A→G	A205A (GCA→GCG)	adeD →	adenine deaminase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,844,578	0	A	G	100.0%	321.1 / NA	85	A205A (GCA→GCG)	adeD	adenine deaminase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (38/47); total (38/47)

ATGTTAACGGTGCCAGTTTTACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCATTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCA  >  NC_000913/3844442‑3844714

aTGTTAACGGTGCCAGTTTTACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGttt                                                                                                                                       <  2:1280214/140‑1 (MQ=255)

  gTTAACGGTGCCAGTTTTACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCg                                                                                                                                     <  1:970412/140‑1 (MQ=255)

      aCGGTGCCAGTTTTACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCAc                                                                                                                                 >  1:292527/1‑140 (MQ=255)

       cGGTGCCAGTTTTACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCAcc                                                                                                                                <  2:952299/140‑1 (MQ=255)

       cGGTGCCAGTTTTACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCAcc                                                                                                                                <  2:1076518/140‑1 (MQ=255)

       cGGTGCCAGTTTTACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCAcc                                                                                                                                <  2:185633/140‑1 (MQ=255)

       cGGTGCCAGTTTTACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCAcc                                                                                                                                <  2:515092/140‑1 (MQ=255)

        ggTGCCAGTTTTACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCt                                                                                                                               >  1:1169471/1‑140 (MQ=255)

           gCCAGTTTTACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGttt                                                                                                                                       <  2:893222/129‑1 (MQ=255)

           gCCAGTTTTACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGttt                                                                                                                                       >  1:893222/1‑129 (MQ=255)

           gCCAGTTTTACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGAc                                                                                                                            >  2:927866/1‑140 (MQ=255)

            ccAGTTTTACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACg                                                                                                                           <  1:152047/140‑1 (MQ=255)

            ccAGTTTTACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACg                                                                                                                           >  1:518494/1‑140 (MQ=255)

            ccAGTTTTACACTTAAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACg                                                                                                                           <  2:1109171/140‑1 (MQ=255)

             cAGTTTTACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGc                                                                                                                          >  1:635992/1‑140 (MQ=255)

                 tttACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGa                                                                                                                      <  1:1217789/140‑1 (MQ=255)

                 tttACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGa                                                                                                                      <  2:428284/140‑1 (MQ=255)

                 tttACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGa                                                                                                                      <  2:635992/140‑1 (MQ=255)

                    aCCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACgg                                                                                                                   >  2:1162526/1‑140 (MQ=255)

                    aCCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACgg                                                                                                                   >  1:410646/1‑140 (MQ=255)

                     cccTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGt                                                                                                                  <  2:1169471/140‑1 (MQ=255)

                       cTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCa                                                                                                                <  1:694102/140‑1 (MQ=255)

                       cTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCa                                                                                                                <  2:735056/140‑1 (MQ=255)

                                aTGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCggg                                                                                                       >  1:534029/1‑140 (MQ=255)

                                aTGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCggg                                                                                                       >  1:1086523/1‑140 (MQ=255)

                                aTGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCggg                                                                                                       >  1:138527/1‑140 (MQ=255)

                                aTGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCggg                                                                                                       >  1:447161/1‑140 (MQ=255)

                                aTGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCggg                                                                                                       >  2:1194115/1‑140 (MQ=255)

                                 tGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGt                                                                                                      >  1:558262/1‑140 (MQ=255)

                                 tGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGt                                                                                                      <  1:92941/140‑1 (MQ=255)

                                   cTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGttt                                                                                                    <  1:988915/140‑1 (MQ=255)

                                    tCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTg                                                                                                   >  2:1041084/1‑140 (MQ=255)

                                      gCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTggg                                                                                                 <  1:1123671/140‑1 (MQ=255)

                                        cTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGggtg                                                                                               <  1:907841/140‑1 (MQ=255)

                                          ggCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTGTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGggtggt                                                                                             >  2:1186951/1‑140 (MQ=255)

                                            cGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTaa                                                                                           >  1:130450/1‑140 (MQ=255)

                                                   aTCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACtt                                                                                    <  2:558262/140‑1 (MQ=255)

                                                   aTCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACtt                                                                                    <  2:1022998/140‑1 (MQ=255)

                                                    tCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTa                                                                                   <  2:933436/140‑1 (MQ=255)

                                                    tCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTa                                                                                   <  1:927163/140‑1 (MQ=255)

                                                    tCCGCAGGGTACCGGCCTTTCAGAAATGATGGACTACCCCGGCGGAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCCGACGCTGGACGGTCACTGCCCGGGTTTGGGGGGTAAAGAAATTa                                                                                   >  2:927163/1‑140 (MQ=255)

                                                    accGCAGGGTACCCGCCTTTCAGAAAAGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCCGACGCCGGACGGTCACTGCCCGGGGTTGGGGGGGAAAGAACTTa                                                                                   >  2:6934/2‑140 (MQ=255)

                                                     ccGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTaa                                                                                  >  1:1123406/1‑140 (MQ=255)

                                                     ccGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTaa                                                                                  <  1:1041084/140‑1 (MQ=255)

                                                      cGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAAc                                                                                 <  2:215193/140‑1 (MQ=255)

                                                      cGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAAc                                                                                 <  2:1086523/140‑1 (MQ=255)

                                                      cGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAAc                                                                                 <  2:292527/140‑1 (MQ=255)

                                                      cGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAAc                                                                                 <  1:379814/140‑1 (MQ=255)

                                                      cGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAAc                                                                                 <  1:49604/140‑1 (MQ=255)

                                                        cAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGc                                                                               <  2:138527/140‑1 (MQ=255)

                                                        cAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGc                                                                               <  2:337285/140‑1 (MQ=255)

                                                        cAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGc                                                                               <  2:397851/140‑1 (MQ=255)

                                                        cAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGc                                                                               <  2:1050119/140‑1 (MQ=255)

                                                        cAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGc                                                                               <  2:1047640/140‑1 (MQ=255)

                                                        cAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGc                                                                               <  1:1194115/140‑1 (MQ=255)

                                                        cAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGc                                                                               <  1:6934/140‑1 (MQ=255)

                                                             tACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCtata                                                                          <  1:927866/140‑1 (MQ=255)

                                                               ccGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATAtt                                                                        >  2:65433/1‑140 (MQ=255)

                                                                     ttGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCg                                                                  >  1:71094/1‑140 (MQ=255)

                                                                      tGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCgg                                                                 <  2:130450/140‑1 (MQ=255)

                                                                      tGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCgg                                                                 >  1:236046/1‑140 (MQ=255)

                                                                                 tgGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAAc                                                      >  2:1042610/1‑140 (MQ=255)

                                                                                 tgGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAAc                                                      >  2:413179/1‑140 (MQ=255)

                                                                                     cTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGCATTGAAAACTGcc                                                  >  2:738434/1‑140 (MQ=255)

                                                                                        cccTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACg                                               >  1:108465/1‑140 (MQ=255)

                                                                                        cccTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACg                                               >  1:1137661/1‑140 (MQ=255)

                                                                                           tGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGaaa                                            >  2:125960/1‑140 (MQ=255)

                                                                                             gCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGt                                          >  2:1255981/1‑140 (MQ=255)

                                                                                                tAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTAt                                       <  2:71094/140‑1 (MQ=255)

                                                                                                  aTTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCa                                     >  1:734459/1‑140 (MQ=255)

                                                                                                  aTTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCa                                     >  2:66059/1‑140 (MQ=255)

                                                                                                   ttAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAg                                    >  1:515073/1‑140 (MQ=255)

                                                                                                    tAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGc                                   <  2:534029/140‑1 (MQ=255)

                                                                                                    tAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGc                                   <  1:642386/140‑1 (MQ=255)

                                                                                                     aGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCt                                  <  2:504591/140‑1 (MQ=255)

                                                                                                       cGGGCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTgg                                >  1:554549/1‑140 (MQ=255)

                                                                                                          gCAGAATGCGCTGCTCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTGgaag                             <  1:125960/140‑1 (MQ=255)

                                                                                                                        tCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGaaa               >  1:325434/1‑140 (MQ=255)

                                                                                                                        tCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGaaa               >  2:888736/1‑140 (MQ=255)

                                                                                                                        tCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGaaa               >  2:222560/1‑140 (MQ=255)

                                                                                                                        tCGATAAACTGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGaaa               >  2:177359/1‑140 (MQ=255)

                                                                                                                                 tGGATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTc      >  2:679613/1‑140 (MQ=255)

                                                                                                                                   gATGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCgg    >  1:6579/1‑140 (MQ=255)

                                                                                                                                    aTGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGc   <  1:679613/140‑1 (MQ=255)

                                                                                                                                    aTGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGc   <  2:325434/140‑1 (MQ=255)

                                                                                                                                    aTGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGc   <  2:447161/140‑1 (MQ=255)

                                                                                                                                    aTGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGc   <  2:214210/140‑1 (MQ=255)

                                                                                                                                     tGCGTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCa  <  2:518494/140‑1 (MQ=255)

ATGTTAACGGTGCCAGTTTTACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGATGGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCATTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCA  >  NC_000913/3844442‑3844714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A