Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	153	60.1	2040486	99.3%	2026202	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,873,008	T→C	intergenic (‑188/+6)	ftsB ← / ← ygbE	cell division protein FtsB/conserved inner membrane protein YgbE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,873,008	0	T	C	100.0%	329.6 / NA	92	intergenic (‑188/+6)	ftsB/ygbE	cell division protein FtsB/conserved inner membrane protein YgbE
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (47/45); total (47/45)

TCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGA  >  NC_000913/2872878‑2873138

tctGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAg                                                                                                                           >  2:544105/1‑140 (MQ=255)

tctGTTGGGGATACCGCGACAACCCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAg                                                                                                                           >  2:876331/1‑140 (MQ=255)

 ctGTTGGGGATACTGCGACAACGCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGc                                                                                                                          >  1:706083/1‑140 (MQ=255)

 ctGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACAATTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGc                                                                                                                          >  2:358921/1‑140 (MQ=255)

 ctGTTGGAGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGc                                                                                                                          >  2:603895/1‑140 (MQ=255)

   gTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGccc                                                                                                                        >  2:716572/1‑140 (MQ=255)

     tGGGGATACCGCGACAACGCGGGTAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAg                                                                                                                      >  2:577486/1‑140 (MQ=255)

       gggATACCGCGACAACGCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTa                                                                                                                    >  2:249278/1‑140 (MQ=255)

       gggATACCGCGACAACGCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTa                                                                                                                    <  2:803784/140‑1 (MQ=255)

        ggATACCGCGACAACGCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAg                                                                                                                   >  2:28207/1‑140 (MQ=255)

         gATACCGCGACAACGCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGc                                                                                                                  <  1:716572/140‑1 (MQ=255)

              cgcgACAACGCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAg                                                                                                                      >  1:265614/1‑131 (MQ=255)

              cgcgACAACGCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAg                                                                                                                      <  2:265614/131‑1 (MQ=255)

              cgcgACAACGCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACAt                                                                                                             >  1:521940/1‑140 (MQ=255)

              cgcgACAACGCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACAt                                                                                                             >  1:937621/1‑140 (MQ=255)

              cgcgACAACGCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACAt                                                                                                             >  2:539849/1‑140 (MQ=255)

                 gACAACGCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATaaa                                                                                                          >  1:332799/1‑140 (MQ=255)

                  aCAACGCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAAc                                                                                                         >  2:200784/1‑140 (MQ=255)

                     aCGCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGt                                                                                                      <  2:356506/140‑1 (MQ=255)

                      cgcgGGCAAATGTACCACATTTGTCAATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTg                                                                                                     >  2:532520/1‑140 (MQ=255)

                        cgGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTgcg                                                                                                   <  2:736133/140‑1 (MQ=255)

                          ggCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGcc                                                                                                 <  2:153142/140‑1 (MQ=255)

                          ggCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGcc                                                                                                 <  1:603895/140‑1 (MQ=255)

                            cAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCaa                                                                                               <  2:55691/140‑1 (MQ=255)

                            cAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCaa                                                                                               <  1:200784/140‑1 (MQ=255)

                            cAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCaa                                                                                               <  1:90070/140‑1 (MQ=255)

                                tGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACAt                                                                                           <  2:937621/140‑1 (MQ=255)

                                        aTTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTa                                                                                   <  2:97735/140‑1 (MQ=255)

                                         tttGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTAc                                                                                  >  2:322424/1‑140 (MQ=255)

                                         tttGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTAc                                                                                  <  1:539849/140‑1 (MQ=255)

                                          ttGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACt                                                                                 >  2:618770/1‑140 (MQ=255)

                                             tCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTc                                                                              >  2:97262/1‑140 (MQ=255)

                                                aTTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCAcc                                                                           <  1:532520/140‑1 (MQ=255)

                                                aTTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCAcc                                                                           <  1:49476/140‑1 (MQ=255)

                                                    ttACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAggg                                                                       >  1:822259/1‑140 (MQ=255)

                                                     tACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGt                                                                      <  2:376055/140‑1 (MQ=255)

                                                          ataCCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGaaaa                                                                 <  1:618770/140‑1 (MQ=255)

                                                          ataCCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGaaaa                                                                 <  1:1194/140‑1 (MQ=255)

                                                             cccAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACaa                                                              <  1:110871/140‑1 (MQ=255)

                                                              ccAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGt                                                                      >  1:887028/1‑131 (MQ=255)

                                                              ccAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGaaaa                                                                 <  1:398617/136‑1 (MQ=255)

                                                              ccAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGaaaa                                                                 >  2:398617/1‑136 (MQ=255)

                                                              ccAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGaa                                                                   <  2:382475/134‑1 (MQ=255)

                                                              ccAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGaa                                                                   >  1:382475/1‑134 (MQ=255)

                                                              ccAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAAt                                                             >  2:779792/1‑140 (MQ=255)

                                                              ccAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAACTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGt                                                                      <  2:887028/131‑1 (MQ=255)

                                                                aGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATAc                                                           >  2:724654/1‑140 (MQ=255)

                                                                 gggCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGATGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACt                                                          >  2:784749/1‑140 (MQ=255)

                                                                 gggCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACt                                                          >  2:548545/1‑140 (MQ=255)

                                                                  ggCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTg                                                         >  1:654144/1‑140 (MQ=255)

                                                                  ggCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTg                                                         >  2:548220/1‑140 (MQ=255)

                                                                  ggCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTg                                                         >  1:433562/1‑140 (MQ=255)

                                                                   gCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTgt                                                        >  2:338677/1‑140 (MQ=255)

                                                                      tGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGt                                                                      <  1:244000/123‑1 (MQ=255)

                                                                      tGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGt                                                                      >  2:244000/1‑123 (MQ=255)

                                                                      tGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGaa                                                                   <  2:120732/126‑1 (MQ=255)

                                                                      tGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGaa                                                                   >  1:120732/1‑126 (MQ=255)

                                                                      tGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTgtagc                                                     >  1:84351/1‑140 (MQ=255)

                                                                      tGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTgtagc                                                     >  1:399095/1‑140 (MQ=255)

                                                                      tGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTgtagc                                                     <  2:822259/140‑1 (MQ=255)

                                                                        cAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTgtagcgt                                                   >  2:992668/1‑140 (MQ=255)

                                                                           aaCATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTgtagcgtagc                                                <  1:338677/140‑1 (MQ=255)

                                                                              aTAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCttt                                             <  2:607238/140‑1 (MQ=255)

                                                                                aaTCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTcc                                           <  2:399095/140‑1 (MQ=255)

                                                                                 aTCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCg                                          <  1:322424/140‑1 (MQ=255)

                                                                                     cATTATTAGTTACGGTTTGAATTATGAACAGAGGAGATGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCa                                      <  1:784749/140‑1 (MQ=255)

                                                                                     cATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCa                                      >  1:1015435/1‑140 (MQ=255)

                                                                                     cATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCa                                      <  1:548545/140‑1 (MQ=255)

                                                                                     cATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCa                                      >  1:993210/1‑140 (MQ=255)

                                                                                     cATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCa                                      <  1:779792/140‑1 (MQ=255)

                                                                                     cATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCa                                      >  1:281698/1‑140 (MQ=255)

                                                                                          ttaGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCaat                                 >  2:500619/1‑140 (MQ=255)

                                                                                                aCGGTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGc                           >  2:193161/1‑140 (MQ=255)

                                                                                                  ggTTTGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAg                         >  2:889665/1‑140 (MQ=255)

                                                                                                    tttGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAgcg                       <  1:577486/140‑1 (MQ=255)

                                                                                                    tttGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAgcg                       >  1:695769/1‑140 (MQ=255)

                                                                                                      tGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCa                     <  1:724654/140‑1 (MQ=255)

                                                                                                      tGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCa                     <  1:97262/140‑1 (MQ=255)

                                                                                                      tGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCa                     <  1:249278/140‑1 (MQ=255)

                                                                                                      tGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCa                     <  1:122221/140‑1 (MQ=255)

                                                                                                      tGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCa                     >  2:602332/1‑140 (MQ=255)

                                                                                                      tGAATTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCa                     <  1:47198/140‑1 (MQ=255)

                                                                                                         aTTATGAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATc                  <  1:602332/140‑1 (MQ=255)

                                                                                                              gAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCccac             <  2:281698/140‑1 (MQ=255)

                                                                                                              gAACAGAGGAGACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCccac             <  1:193161/140‑1 (MQ=255)

                                                                                                                    aggagACGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTAc       >  2:184162/1‑140 (MQ=255)

                                                                                                                      gagaCGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACcg     <  2:993210/140‑1 (MQ=255)

                                                                                                                      gagaCGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACcg     <  2:1015435/140‑1 (MQ=255)

                                                                                                                       agaCGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCa                     >  1:258522/1‑123 (MQ=255)

                                                                                                                       agaCGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCa                     <  2:258522/123‑1 (MQ=255)

                                                                                                                        gaCGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACcgcg   <  1:500619/140‑1 (MQ=255)

                                                                                                                         aCGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATGCTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGa  >  2:892400/1‑140 (MQ=255)

                                                                                                                         aCGGGAAAGCACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTAACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGa  >  2:533336/1‑140 (MQ=255)

TCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGA  >  NC_000913/2872878‑2873138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A