Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R1
|
153 |
60.1 |
2040486 |
99.3% |
2026202 |
138.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,027,944 |
T→C |
V275A (GTG→GCG) |
ghxQ → |
guanine/hypoxanthine transporter GhxQ |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,027,944 | 0 | T | C | 100.0%
| 218.0
/ NA
| 62 | V275A (GTG→GCG) | ghxQ | guanine/hypoxanthine transporter GhxQ |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (33/29); total (33/29) |
AAATACCACGGTCTGGTGGCGATGCCAAGCCTGACTGGCGAAGATGGTAAGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGTGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCC > NC_000913/3027811‑3028069
|
aaaTACCACGGTCTGGTGGCGATGCCAAGCCTGACTGGCGAAGATGGTAAGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGa > 1:834095/1‑140 (MQ=255)
ccACGGTCTGGTGGCGATGCCAAGCCTGACTGGCGAAGATGGTAAGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTa < 2:118848/140‑1 (MQ=255)
tggtggCGATGCCAAGCCTGACTGGCGAAGATGGTAAGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGAc < 2:734026/128‑1 (MQ=255)
tggtggCGATGCCAAGCCTGACTGGCGAAGATGGTAAGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGAc > 1:734026/1‑128 (MQ=255)
gtggCGATGCCAAGCCTGACTGGCGAAGATGGTAAGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCAt > 1:249980/1‑140 (MQ=255)
gtggCGATGCCAAGCCTGACTGGCGAAGATGGTAAGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCAt > 1:825611/1‑140 (MQ=255)
aTGCCAAGCCTGACTGGCGAAGATGGTAAGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGc > 2:498612/1‑140 (MQ=255)
aaGCCTGACTGGCGAAGATGGTAAGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCg < 1:465273/140‑1 (MQ=255)
aCTGGCGAAGATGGTAAGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCa > 2:622219/1‑140 (MQ=255)
aCTGGCGAAGATGGTAAGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCa > 2:493021/1‑140 (MQ=255)
cGAAGATGGTAAGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGa > 2:527076/1‑140 (MQ=255)
aaGATGGTAAGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAAt > 2:737260/1‑140 (MQ=255)
tGGTAAGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATttgt > 2:846443/1‑140 (MQ=255)
tGGTAAGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATttgt < 1:622219/140‑1 (MQ=255)
tGGTAAGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATttgt < 1:73859/140‑1 (MQ=255)
tAAGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTgg > 2:1019880/1‑140 (MQ=255)
aaGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGa < 2:443335/140‑1 (MQ=255)
gATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACa < 2:453028/140‑1 (MQ=255)
tttCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAAcc > 1:434801/1‑140 (MQ=255)
tCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAg < 2:825611/140‑1 (MQ=255)
cAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGa > 2:639904/1‑140 (MQ=255)
ccTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGatca > 2:791941/1‑140 (MQ=255)
gATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATaaa < 2:246742/123‑1 (MQ=255)
gATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATaaa > 1:246742/1‑123 (MQ=255)
attatGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAAcgg < 1:527076/140‑1 (MQ=255)
gggTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCa < 2:562708/140‑1 (MQ=255)
gggTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGATGGATAAAGACAACCAGATCATCAACGGCGGCa < 1:493021/140‑1 (MQ=255)
gTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCaaa < 1:846443/140‑1 (MQ=255)
gaaCTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGc > 1:416849/3‑140 (MQ=255)
gCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCa > 1:124601/1‑136 (MQ=255)
gCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCa < 2:124601/136‑1 (MQ=255)
gCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGc > 2:638225/1‑140 (MQ=255)
gCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGc > 1:15661/1‑140 (MQ=255)
cACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGcc > 1:984792/1‑140 (MQ=255)
cACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGcc > 2:683396/1‑140 (MQ=255)
cACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGcc > 1:61890/1‑140 (MQ=255)
cACTCCAGCCAACTGNACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGcc > 1:583791/1‑140 (MQ=255)
aCTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGatca < 1:515141/122‑1 (MQ=255)
aCTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGatca > 2:515141/1‑122 (MQ=255)
aCTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCa > 1:457110/1‑134 (MQ=255)
aCTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCa < 2:457110/134‑1 (MQ=255)
aCTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGccc < 2:834095/140‑1 (MQ=255)
aCTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGccc < 2:15661/140‑1 (MQ=255)
aCTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGccc > 2:709037/1‑140 (MQ=255)
aCTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGccc < 1:954526/140‑1 (MQ=255)
ccAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGCCCTGACCAg < 2:61890/140‑1 (MQ=255)
aaCTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGCCCTGACCAGTg < 2:434801/140‑1 (MQ=255)
aCTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGCCCTGACCAGTGa < 1:683396/140‑1 (MQ=255)
aCTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGCCCTGACCAGTGa < 1:791941/140‑1 (MQ=255)
cTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGCCCTGACCAGTGAc < 2:984792/140‑1 (MQ=255)
cTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGCCCTGACCAGTGAc < 2:583791/140‑1 (MQ=255)
tGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCATAGCCCTGACCAGTGACt > 1:776519/1‑140 (MQ=255)
tGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGCCCTGACCAGTGACt > 2:14572/1‑140 (MQ=255)
tACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGCCCTGACCAGTGACTCa > 2:336185/1‑140 (MQ=255)
tCCGAGTGTACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGCCCTGACCAGTGACTCAGTaa < 2:434190/140‑1 (MQ=255)
tgtACTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGCCCTGACCAGTGACTCAGTAAGTTCaa > 1:654322/1‑140 (MQ=255)
cTGGCATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGCCCTGACCAGTGACTCAGTAAGTTCAATAtt < 2:654322/140‑1 (MQ=255)
cATTGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTcc > 1:379943/1‑140 (MQ=255)
tGGTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGc < 1:336185/140‑1 (MQ=255)
ggTGATGACCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGcc > 2:214003/1‑140 (MQ=255)
tgaCCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGCCATGACCAGTGACTCAGTAAGTTCAat > 1:945003/1‑124 (MQ=255)
tgaCCGCAGCGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGCCATGACCAGTGACTCAGTAAGTTCAat < 2:945003/124‑1 (MQ=255)
|
AAATACCACGGTCTGGTGGCGATGCCAAGCCTGACTGGCGAAGATGGTAAGTCTCTGATTTTCAGCCTCGATATTATGGGTGCACTCCAGCCAACTGTACTTCCGAGTGTACTGGCATTGGTGATGACCGCAGTGTTCGACGCTACTGGCACCATCCGTGCCGTCGCCGGTCAGGCGAATTTGTTGGATAAAGACAACCAGATCATCAACGGCGGCAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCC > NC_000913/3027811‑3028069
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A