Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 153 60.1 2040486 99.3% 2026202 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,116,287 G→A S942S (AGC→AGT)  yghJ ← putative lipoprotein YghJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,116,2870GA97.8% 307.0 / ‑3.8 89S942S (AGC→AGT) yghJputative lipoprotein YghJ
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base A (46/41);  minor base T (1/1);  total (47/42)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCATCATTGGCGTAGCAGTTCAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACGCTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGT  >  NC_000913/3116150‑3116421
                                                                                                                                         |                                                                                                                                      
gCATCATTGGCGTAGCAGTTCAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACact                                                                                                                                      >  2:945695/1‑140 (MQ=255)
gCATCATTGGCGTAGCAGTTCAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACact                                                                                                                                      >  2:566775/1‑140 (MQ=255)
  atcatTGGCGTAGCAGTTCAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACactgc                                                                                                                                    >  1:868148/1‑140 (MQ=255)
     atTGGCGTAGCAGTTCAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCa                                                                                                                                 >  2:753612/1‑140 (MQ=255)
     atTGGCGTAGCAGTTCAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCa                                                                                                                                 >  2:306585/1‑140 (MQ=255)
      ttGGCGTAGCAGTTCAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAg                                                                                                                                <  1:306585/140‑1 (MQ=255)
      ttGGCGTAGCAGTTCAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAg                                                                                                                                >  1:213311/1‑140 (MQ=255)
        ggCGTAGCAGTTCAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGAc                                                                                                                              <  1:945695/140‑1 (MQ=255)
           gTAGCAGTTCAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCt                                                                                                                           <  2:945714/140‑1 (MQ=255)
              gCAGTTCAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCAc                                                                                                                        >  1:1006391/1‑140 (MQ=255)
               cAGTTCAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCAcc                                                                                                                       >  1:371473/1‑140 (MQ=255)
                    cAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGc                                                                                                                  <  2:1006391/140‑1 (MQ=255)
                    cAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGc                                                                                                                  >  1:296151/1‑140 (MQ=255)
                       gAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGAc                                                                                                               >  2:12746/1‑140 (MQ=255)
                          cTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCAt                                                                                                            <  1:683336/140‑1 (MQ=255)
                          cTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCAt                                                                                                            <  1:12746/140‑1 (MQ=255)
                           tCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCAtt                                                                                                           <  2:550440/140‑1 (MQ=255)
                            cGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTg                                                                                                          >  1:787554/1‑140 (MQ=255)
                            cGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTg                                                                                                          >  1:736106/1‑140 (MQ=255)
                             ggTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTgg                                                                                                         >  1:860404/1‑140 (MQ=255)
                                 aaCGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCg                                                                                                     <  2:213311/140‑1 (MQ=255)
                                 aaCGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCg                                                                                                     <  2:860404/140‑1 (MQ=255)
                                  aCGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCgg                                                                                                    <  1:363128/140‑1 (MQ=255)
                                       ttAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTa                                                                                               >  2:572703/1‑140 (MQ=255)
                                          aaGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTagag                                                                                            <  1:919135/140‑1 (MQ=255)
                                          aaGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTagag                                                                                            <  2:367718/140‑1 (MQ=255)
                                            gCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCt                                                                                          <  1:566775/140‑1 (MQ=255)
                                             cccAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTc                                                                                         >  1:383002/1‑140 (MQ=255)
                                              ccAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCgg                                                                                                    >  1:859410/1‑128 (MQ=255)
                                              ccAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCgg                                                                                                    <  2:859410/128‑1 (MQ=255)
                                                  cTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCt                                                                                    <  2:383002/140‑1 (MQ=255)
                                                          ttttGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGa                                                                            <  1:753612/140‑1 (MQ=255)
                                                              gCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCt                                                                        <  2:787554/140‑1 (MQ=255)
                                                               ccTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTg                                                                       >  2:234602/1‑140 (MQ=255)
                                                                    ttcATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGt                                                                  <  2:217241/140‑1 (MQ=255)
                                                                              tAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACTCTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTaa                                                        >  1:156564/1‑140 (MQ=255)
                                                                              tAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCTTaa                                                        >  2:10527/1‑140 (MQ=255)
                                                                              tAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTaa                                                        >  1:265657/1‑140 (MQ=255)
                                                                              tAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTaa                                                        >  1:559396/1‑140 (MQ=255)
                                                                                 cTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTg                                                                >  1:616132/1‑129 (MQ=255)
                                                                                 cTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTg                                                                <  2:616132/129‑1 (MQ=255)
                                                                                 cTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATc                                                     >  2:917168/1‑140 (MQ=255)
                                                                                  tCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACTCTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATcc                                                    <  2:156564/140‑1 (MQ=255)
                                                                                   cGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCg                                                   <  1:572703/140‑1 (MQ=255)
                                                                                      aTCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAg                                                >  1:501729/1‑140 (MQ=255)
                                                                                          ttCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTg                                            >  1:607709/1‑140 (MQ=255)
                                                                                          ttCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTg                                            >  1:126215/1‑140 (MQ=255)
                                                                                          ttCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTg                                            >  2:893221/1‑140 (MQ=255)
                                                                                               caGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCa                                       >  2:107545/1‑140 (MQ=255)
                                                                                                aGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCAt                                      >  1:785827/1‑140 (MQ=255)
                                                                                                  ccAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCg                                    >  2:785128/1‑140 (MQ=255)
                                                                                                    aGACCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCt                                  >  1:820266/1‑140 (MQ=255)
                                                                                                      aCCGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCttt                                >  1:3416/1‑140 (MQ=255)
                                                                                                       ccGACATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCtttt                               >  1:1004624/1‑140 (MQ=255)
                                                                                                          aCATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCa                            >  2:291925/1‑140 (MQ=255)
                                                                                                           cATGTTCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAg                           >  1:246529/1‑140 (MQ=255)
                                                                                                               ttCTGGTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTc                       >  2:413368/1‑140 (MQ=255)
                                                                                                                    gTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGt                  >  1:146333/1‑140 (MQ=255)
                                                                                                                    gTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGt                  <  2:868148/140‑1 (MQ=255)
                                                                                                                    gTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGt                  >  1:1017177/1‑140 (MQ=255)
                                                                                                                    gTACAGACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGt                  >  1:93894/1‑140 (MQ=255)
                                                                                                                         gACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAgtgt                        >  1:856513/1‑129 (MQ=255)
                                                                                                                         gACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAgtgt                        <  2:856513/129‑1 (MQ=255)
                                                                                                                         gACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAgg             >  1:660557/1‑140 (MQ=255)
                                                                                                                         gACGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAgg             >  2:934089/1‑140 (MQ=255)
                                                                                                                          aCGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGc            >  1:609290/1‑140 (MQ=255)
                                                                                                                          aCGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGc            >  2:741991/1‑140 (MQ=255)
                                                                                                                          aCGTTCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGc            >  1:662584/1‑140 (MQ=255)
                                                                                                                             ttCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTa         <  2:660557/140‑1 (MQ=255)
                                                                                                                             ttCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTa         <  2:126215/140‑1 (MQ=255)
                                                                                                                             ttCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTa         <  1:291925/140‑1 (MQ=255)
                                                                                                                             ttCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTa         <  2:607709/140‑1 (MQ=255)
                                                                                                                             ttCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTa         <  2:1004624/140‑1 (MQ=255)
                                                                                                                             ttCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTa         <  2:136278/140‑1 (MQ=255)
                                                                                                                             ttCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTa         <  2:1017177/140‑1 (MQ=255)
                                                                                                                             ttCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTa         <  1:934089/140‑1 (MQ=255)
                                                                                                                             ttCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTa         <  2:371473/140‑1 (MQ=255)
                                                                                                                              tCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTa         >  1:879751/1‑139 (MQ=255)
                                                                                                                              tCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTa         <  2:879751/139‑1 (MQ=255)
                                                                                                                              tCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAg        <  1:917168/140‑1 (MQ=255)
                                                                                                                              tCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAg        <  2:3416/140‑1 (MQ=255)
                                                                                                                              tCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAg        >  1:32645/1‑140 (MQ=255)
                                                                                                                              tCCAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAg        >  2:479877/1‑140 (MQ=255)
                                                                                                                               ccAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTa         >  1:154891/1‑138 (MQ=255)
                                                                                                                               ccAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTa         <  2:154891/138‑1 (MQ=255)
                                                                                                                               ccAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGt       <  2:736106/140‑1 (MQ=255)
                                                                                                                               ccAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGt       <  1:484701/140‑1 (MQ=255)
                                                                                                                                cAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGtt      <  2:785827/140‑1 (MQ=255)
                                                                                                                                cAGATCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGtt      <  1:413368/140‑1 (MQ=255)
                                                                                                                                    tCGACACTGCTCAGACGCTCACCTTTGTGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGt  <  2:26200/140‑1 (MQ=255)
                                                                                                                                    tCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTa         >  1:122423/1‑133 (MQ=255)
                                                                                                                                    tCGACACTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTa         <  2:122423/133‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                      
GCATCATTGGCGTAGCAGTTCAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACGCTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACGCTGAATGTTGGTGCCTAAATCCGCAGCCTGCACCATCGCTTTTGCAGTGTCGGCGTTAAGGCTTAGTTGCGT  >  NC_000913/3116150‑3116421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A