Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	153	60.1	2040486	99.3%	2026202	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,245,633	G→A	G137D (GGC→GAC)	exuT →	hexuronate transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,245,633	0	G	A	100.0%	235.2 / NA	69	G137D (GGC→GAC)	exuT	hexuronate transporter
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (25/44); total (25/44)

CCGCGCTGGCAGGTAGCTGGGGTGGCCTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGGCTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCGGTGCATTGAGCTTTATCTGGGCGATGGCATGGCTG  >  NC_000913/3245498‑3245769

ccGCGCTGGCAGGTAGCTGGGGTGGCCTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTAc                                                                                                                                      <  1:439683/140‑1 (MQ=255)

ccGCGCTGGCAGGTAGCTGGGGTGGCCTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTAc                                                                                                                                      <  1:423158/140‑1 (MQ=255)

     cTGGCAGGTAGCTGGGGTGGCCTGGCTGTTGCTAGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTaa                                                                                                                                 >  1:429642/1‑140 (MQ=255)

       ggCAGGTAGCTGGGGTGGCCTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACg                                                                                                                               >  1:790725/1‑140 (MQ=255)

         cAGGTAGCTGGGGTGGCCTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTa                                                                                                                             <  1:996350/140‑1 (MQ=255)

         cAGGTAGCTGGGGTGGCCTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTa                                                                                                                             <  1:955072/140‑1 (MQ=255)

          aGGTAGCTGGGGTGGCCTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAg                                                                                                                            <  2:512165/140‑1 (MQ=255)

            gTAGCTGGGGTGGCCTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGt                                                                                                                          <  2:12461/140‑1 (MQ=255)

             tAGCTGGGGTGGCCTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGtt                                                                                                                         >  1:937319/1‑140 (MQ=255)

              aGCTGGGGTGGCCTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGttc                                                                                                                        <  2:790725/140‑1 (MQ=255)

              aGCTGGGGTGGCCTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGttc                                                                                                                        <  1:126933/140‑1 (MQ=255)

              aGCTCGGGTGGCCTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGttc                                                                                                                        <  2:937319/140‑1 (MQ=255)

                 tGGGGTGGCCTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGttcttc                                                                                                                     <  1:251881/140‑1 (MQ=255)

                  ggggTGGCCTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCg                                                                                                                    >  1:469365/1‑140 (MQ=255)

                  ggggTGGCCTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCg                                                                                                                    >  2:386971/1‑140 (MQ=255)

                    ggTGGCCTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGAt                                                                                                                  <  2:768905/140‑1 (MQ=255)

                    ggTGGCCTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGAt                                                                                                                  <  1:640753/140‑1 (MQ=255)

                         ccTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGGTCCCGGCGAAAAAGCGGTCCATCGCAGTAGACTACTTTAACGTAGGGTCTTCGATTGGTg                                                                                                             >  2:121919/1‑140 (MQ=255)

                             gCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCgat                                                                                                         >  2:778880/1‑140 (MQ=255)

                                  tGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTg                                                                                                    >  2:638448/1‑140 (MQ=255)

                                  tGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTg                                                                                                    >  1:533956/1‑140 (MQ=255)

                                  tGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTg                                                                                                    >  2:159672/1‑140 (MQ=255)

                                        tggtgCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGcgccgc                                                                                              <  2:424044/140‑1 (MQ=255)

                                        tggtgCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGcgccgc                                                                                              <  1:778880/140‑1 (MQ=255)

                                          gtgCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGcgccgccg                                                                                            <  2:496048/140‑1 (MQ=255)

                                          gtgCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGcgccgccg                                                                                            <  2:572847/140‑1 (MQ=255)

                                           tgCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGcgccgccgc                                                                                           >  2:893728/1‑140 (MQ=255)

                                             cggtcggtGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCtg                                                                                         <  1:580206/140‑1 (MQ=255)

                                             cggtcggtGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCtg                                                                                         <  1:419050/140‑1 (MQ=255)

                                             cggtcggtGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCtg                                                                                         <  1:893728/140‑1 (MQ=255)

                                              ggtcggtGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCtgg                                                                                        >  2:24510/1‑140 (MQ=255)

                                                     gCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATg                                                                                 <  2:469365/140‑1 (MQ=255)

                                                       cgcgGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATggg                                                                               <  1:638448/140‑1 (MQ=255)

                                                       cgcgGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATggg                                                                               <  1:159672/140‑1 (MQ=255)

                                                        gcgGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGc                                                                              <  1:980171/140‑1 (MQ=255)

                                                        gcgGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGc                                                                              <  1:24510/140‑1 (MQ=255)

                                                         cgGAAGCAGCGATGATCCCGGCGGGTCTGGAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGGGGTCCATCCCAGGAGAATACTTTTACGTAAGTTCTTCGATTTGGGGGGTGATTGCGCCGCCGCTGGTGGGATgggga                                                                             >  2:259707/1‑138 (MQ=255)

                                                              gcagcGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGt                                                                        >  1:752396/1‑140 (MQ=255)

                                                                    gtgatCCCGGCGGGTCTGGAAGGCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGca                                                                  <  2:893420/139‑1 (MQ=255)

                                                                      gatCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGcaca                                                                >  2:500250/1‑140 (MQ=255)

                                                                      gatCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGcac                                                                 >  1:120420/1‑139 (MQ=255)

                                                                      gatCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGcac                                                                 <  2:120420/139‑1 (MQ=255)

                                                                       atCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAg                                                               <  1:121919/140‑1 (MQ=255)

                                                                             gcggGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCa                                                         <  2:623850/140‑1 (MQ=255)

                                                                             gcggGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGGGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCa                                                         >  2:256354/1‑140 (MQ=255)

                                                                              cggGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAg                                                        >  1:696932/1‑140 (MQ=255)

                                                                                 gTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATg                                                     >  1:124247/1‑140 (MQ=255)

                                                                                  tCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATgg                                                    >  1:884308/1‑140 (MQ=255)

                                                                                  tCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATgg                                                    <  2:477278/140‑1 (MQ=255)

                                                                                   cTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGc                                                   >  1:650220/1‑140 (MQ=255)

                                                                                     gAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCAt                                                 <  1:703845/140‑1 (MQ=255)

                                                                                         gCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTat                                             <  2:884308/140‑1 (MQ=255)

                                                                                          ccAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTatc                                            <  2:124247/140‑1 (MQ=255)

                                                                                           cAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTatca                                           >  1:145336/1‑140 (MQ=255)

                                                                                              cTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCAtct                                        >  2:338458/1‑140 (MQ=255)

                                                                                                 cGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATTGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCg                                     <  1:430814/140‑1 (MQ=255)

                                                                                                 cGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCg                                     <  2:77996/140‑1 (MQ=255)

                                                                                                   aaTGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCGGt                                   <  2:414662/140‑1 (MQ=255)

                                                                                                       gTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCGGTGCAt                               <  2:148659/140‑1 (MQ=255)

                                                                                                       gTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCGGTGCAt                               <  2:533956/140‑1 (MQ=255)

                                                                                                       gTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCGGTGCAt                               <  2:429642/140‑1 (MQ=255)

                                                                                                       gTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCGGTGCAt                               <  1:386971/140‑1 (MQ=255)

                                                                                                        ttCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCGGTGCAtt                              <  2:650220/140‑1 (MQ=255)

                                                                                                        ttCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCGGTGCAtt                              <  2:752396/140‑1 (MQ=255)

                                                                                                        ttCCCGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCGGTGCAtt                              >  1:276769/1‑140 (MQ=255)

                                                                                                           ccGGCGAAAGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCGGTGCATTGAg                           <  1:500250/140‑1 (MQ=255)

                                                                                                                  aaGAGCGTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCGGTGCATTGAGCTTTATc                    <  1:203518/140‑1 (MQ=255)

                                                                                                                        gTTCCATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCGGTGCATTGAGCTTTATCTGGGCg              <  1:56571/140‑1 (MQ=255)

                                                                                                                            cATCGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCGGTGCATTGAGCTTTATCTGGGCGatgg          >  2:906518/1‑140 (MQ=255)

                                                                                                                               cGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCGGTGCATTGAGCTTTATCTGGGCGatggcat       >  1:933995/1‑140 (MQ=255)

                                                                                                                               cGCAGTAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCGGTGCATTGAGCTTTATCTGGGCGatggcat       <  1:543235/140‑1 (MQ=255)

                                                                                                                                    tAGACTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCGGTGCATTGAGCTTTATCTGGGCGATGGCATGGCTg  >  2:144864/1‑140 (MQ=255)

CCGCGCTGGCAGGTAGCTGGGGTGGCCTGGCTGTTGCTCGTGGTGCGGTCGGTGCCGCGGAAGCAGCGATGATCCCGGCGGGTCTGAAAGCCAGCTCCGAATGGTTCCCGGCGAAAGAGCGTTCCATCGCAGTAGGCTACTTTAACGTAGGTTCTTCGATTGGTGCGATGATTGCGCCGCCGCTGGTGGTATGGGCAATCGTAATGCACAGCTGGCAGATGGCATTTATCATCTCCGGTGCATTGAGCTTTATCTGGGCGATGGCATGGCTG  >  NC_000913/3245498‑3245769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A