Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	153	60.1	2040486	99.3%	2026202	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,840,260	C→T	P16S (CCA→TCA)	yicS →	uncharacterized protein YicS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,840,260	0	C	T	100.0%	277.9 / NA	78	P16S (CCA→TCA)	yicS	uncharacterized protein YicS
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (41/37); total (41/37)

ACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAA  >  NC_000913/3840124‑3840386

aCGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAg                                                                                                                             >  2:830485/1‑140 (MQ=255)

aCGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAg                                                                                                                             >  1:273000/1‑140 (MQ=255)

 cGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAgg                                                                                                                            >  2:155813/1‑140 (MQ=255)

 cGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAgg                                                                                                                            >  1:199014/1‑140 (MQ=255)

 cGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAg                                                                                                                             >  2:917645/1‑139 (MQ=255)

 cGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAg                                                                                                                             <  1:917645/139‑1 (MQ=255)

 cGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCAC‑TTTTTCGGTATGTCAggg                                                                                                                           >  2:994482/1‑139 (MQ=255)

  gCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGc                                                                                                                           <  2:968257/140‑1 (MQ=255)

  gCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGc                                                                                                                           <  2:550168/140‑1 (MQ=255)

  gCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGc                                                                                                                           <  2:828613/140‑1 (MQ=255)

   cAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCa                                                                                                                          <  2:651476/140‑1 (MQ=255)

            ttCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACg                                                                                                                 <  1:742225/140‑1 (MQ=255)

                tACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGa                                                                                                             >  1:867790/1‑140 (MQ=255)

                    gCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCg                                                                                                         <  2:720056/140‑1 (MQ=255)

                    gCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCg                                                                                                         >  2:175521/1‑140 (MQ=255)

                    gCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCg                                                                                                         <  2:458310/140‑1 (MQ=255)

                    gCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCg                                                                                                         <  1:830485/140‑1 (MQ=255)

                         atgaGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCttt                                                                                                    <  1:58241/140‑1 (MQ=255)

                         atgaGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCttt                                                                                                    <  1:568404/140‑1 (MQ=255)

                          tgaGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCtttt                                                                                                   >  2:194328/1‑140 (MQ=255)

                           gagaGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTa                                                                                                  <  1:175521/140‑1 (MQ=255)

                              agCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCt                                                                                               >  1:784862/1‑140 (MQ=255)

                              agCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCt                                                                                               >  1:51482/1‑140 (MQ=255)

                               gCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTc                                                                                              >  1:205371/1‑140 (MQ=255)

                               gCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTc                                                                                              >  1:559935/1‑140 (MQ=255)

                                cGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCa                                                                                             >  2:893906/1‑140 (MQ=255)

                                  aTGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACt                                                                                           >  1:512824/1‑140 (MQ=255)

                                   tGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTg                                                                                          >  2:286770/1‑140 (MQ=255)

                                   tGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTg                                                                                          >  2:517155/1‑140 (MQ=255)

                                   tGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTg                                                                                          <  2:525318/140‑1 (MQ=255)

                                   tGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTg                                                                                          <  1:517155/140‑1 (MQ=255)

                                          aaaCTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCg                                                                                   <  2:512824/140‑1 (MQ=255)

                                            aCTACACTTATGCTTCATTCGATACACATTTGTAAAAGGGTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCa                                                                                 >  2:435108/1‑140 (MQ=255)

                                               acacTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCaaaa                                                                              >  2:592376/1‑140 (MQ=255)

                                                 acTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAaga                                                                            >  1:579974/1‑140 (MQ=255)

                                                   ttATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCa                                                                                        >  1:831604/1‑126 (MQ=255)

                                                   ttATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCa                                                                                        <  2:831604/126‑1 (MQ=255)

                                                      tGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGaaaa                                                                       >  1:47852/1‑140 (MQ=255)

                                                        cTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAAcc                                                                     >  2:934632/1‑140 (MQ=255)

                                                        cTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAAcc                                                                     >  1:1008869/1‑140 (MQ=255)

                                                         ttCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCa                                                                    <  1:286770/140‑1 (MQ=255)

                                                          tCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCAc                                                                   >  2:563172/1‑140 (MQ=255)

                                                          tCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCAc                                                                   <  2:559935/140‑1 (MQ=255)

                                                           cATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACg                                                                  >  1:204557/1‑140 (MQ=255)

                                                           cATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACg                                                                  <  2:409751/140‑1 (MQ=255)

                                                                  tACACATTTGTAAAAGGTTGAATCTATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCAc                                                                   <  2:780773/132‑1 (MQ=255)

                                                                  tACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCAc                                                                   >  1:780773/1‑132 (MQ=255)

                                                                       aTTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAAc                                                                      <  2:404756/124‑1 (MQ=255)

                                                                       aTTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAAc                                                                      >  1:404756/1‑124 (MQ=255)

                                                                       aTTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACg                                                                  >  2:194501/1‑128 (MQ=255)

                                                                       aTTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACg                                                                  <  1:194501/128‑1 (MQ=255)

                                                                            tAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGAtt                                                     <  1:138559/136‑1 (MQ=255)

                                                                            tAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGAtt                                                     >  2:138559/1‑136 (MQ=255)

                                                                               aaGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTaa                                              >  1:514333/1‑140 (MQ=255)

                                                                                 ggTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTaaaa                                            >  1:967085/1‑140 (MQ=255)

                                                                                 ggTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTaaaa                                            >  2:800859/1‑140 (MQ=255)

                                                                                   ttGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAAtt                                          >  2:762753/1‑140 (MQ=255)

                                                                                     gAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTg                                        <  2:435856/140‑1 (MQ=255)

                                                                                      aaTCAATGAACCCAACGACCCTCCTGTTTATTTTC‑CTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCa                                      <  1:994482/140‑1 (MQ=255)

                                                                                       aTCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCa                                      <  2:205371/140‑1 (MQ=255)

                                                                                           aTGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTg                                        >  1:658782/1‑134 (MQ=255)

                                                                                           aTGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTg                                        <  2:658782/134‑1 (MQ=255)

                                                                                           aTGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGcc                                  >  2:292044/1‑140 (MQ=255)

                                                                                               aaCCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAg                              <  1:563172/140‑1 (MQ=255)

                                                                                               aaCCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAg                              <  2:579974/140‑1 (MQ=255)

                                                                                                  cAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCg                           <  2:1008869/140‑1 (MQ=255)

                                                                                                  cAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCg                           <  2:784862/140‑1 (MQ=255)

                                                                                                    aCGACACTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTc                         >  2:552485/1‑140 (MQ=255)

                                                                                                        cacTACTGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTa                     >  2:185947/1‑140 (MQ=255)

                                                                                                         actactGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTAt                    <  1:893906/140‑1 (MQ=255)

                                                                                                              tGCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGAt               >  1:880142/1‑140 (MQ=255)

                                                                                                               gCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATg              <  2:867790/140‑1 (MQ=255)

                                                                                                               gCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATg              <  2:47852/140‑1 (MQ=255)

                                                                                                               gCTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATg              <  1:292044/140‑1 (MQ=255)

                                                                                                                cTTATTTTCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGa             >  2:115337/1‑140 (MQ=255)

                                                                                                                    ttttCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCg         <  1:115337/140‑1 (MQ=255)

                                                                                                                     tttCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGt        >  2:514645/1‑140 (MQ=255)

                                                                                                                     tttCACTTTTTTCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGt        >  1:41246/1‑140 (MQ=255)

                                                                                                                           ttttttCGCTATGTCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGaaa  <  1:552485/140‑1 (MQ=255)

ACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGCACGCCACAGGCGTCATTATCAGATGAAGCGTGGGAAA  >  NC_000913/3840124‑3840386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A