Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 112 94.0 3211786 99.3% 3189303 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,928,276 T→C S16S (AGT→AGC)  sdaC → serine:H(+) symporter SdaC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,928,2760TC100.0% 312.9 / NA 86S16S (AGT→AGC) sdaCserine:H(+) symporter SdaC
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (39/47);  total (39/47)

GATAGACAGATTTCATTTTTACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCC  >  NC_000913/2928140‑2928412
                                                                                                                                        |                                                                                                                                        
gATAGACAGATTTCATTTTTACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGcc                                                                                                                                       <  2:830248/140‑1 (MQ=255)
 aTAGACAGATTTCATTTTTACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCt                                                                                                                                      >  1:987669/1‑140 (MQ=255)
      cAGATTTCATTTTTACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGgcgc                                                                                                                                 <  1:128841/140‑1 (MQ=255)
         aTTTCATTTTTACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAag                                                                                                                              >  1:507703/1‑140 (MQ=255)
          tttCATTTTTACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAaga                                                                                                                             <  1:873032/140‑1 (MQ=255)
          tttCATTTTTACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAaga                                                                                                                             <  1:780360/140‑1 (MQ=255)
          tttCATTTTTACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAaga                                                                                                                             <  1:1351337/140‑1 (MQ=255)
           ttCATTTTTACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAagac                                                                                                                            <  1:2880/140‑1 (MQ=255)
              aTTTTTACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAagacaga                                                                                                                         <  1:1306341/140‑1 (MQ=255)
               acggtcaggTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAagacagac                                                                                                                        <  2:895967/133‑1 (MQ=255)
                ttttACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAgacagaca                                                                                                                       <  1:32499/140‑1 (MQ=255)
                 tttACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGacac                                                                                                                      <  1:234416/140‑1 (MQ=255)
                   tACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCa                                                                                                                    >  1:77952/1‑140 (MQ=255)
                       gTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCAtgtg                                                                                                                <  2:1359386/140‑1 (MQ=255)
                            gCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGc                                                                                                           <  2:1356217/140‑1 (MQ=255)
                            gCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGc                                                                                                           >  2:655685/1‑140 (MQ=255)
                            gCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGc                                                                                                           >  1:1536675/1‑140 (MQ=255)
                            gCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGc                                                                                                           <  2:558769/140‑1 (MQ=255)
                               ccTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTgg                                                                                                        <  2:54292/140‑1 (MQ=255)
                               ccTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTgg                                                                                                        <  2:427642/140‑1 (MQ=255)
                                 ttCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGc                                                                                                      <  1:1271437/140‑1 (MQ=255)
                                  tCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCAtgtg                                                                                                                >  2:610630/1‑129 (MQ=255)
                                  tCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCAtgtg                                                                                                                <  1:610630/129‑1 (MQ=255)
                                  tCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGcc                                                                                                     >  1:1387932/1‑140 (MQ=255)
                                   cccGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCt                                                                                                    <  1:180175/140‑1 (MQ=255)
                                          tGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTacggc                                                                                             <  2:50145/140‑1 (MQ=255)
                                           gAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCCATCCAGCACGATTGCGTCGAAAGGCTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTacggca                                                                                            <  2:816566/140‑1 (MQ=255)
                                                           gAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCggg                                                                            >  2:916233/1‑140 (MQ=255)
                                                            aaTTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGc                                                                           >  2:1087336/1‑140 (MQ=255)
                                                            aaTTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGc                                                                           >  2:274862/1‑140 (MQ=255)
                                                            aaTTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGc                                                                           >  2:1123664/1‑140 (MQ=255)
                                                               tattTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTg                                                                        <  1:911287/140‑1 (MQ=255)
                                                               tattTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTg                                                                        <  1:655685/140‑1 (MQ=255)
                                                               tattTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTg                                                                        <  2:507703/140‑1 (MQ=255)
                                                               tattTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTg                                                                        <  1:365662/140‑1 (MQ=255)
                                                               tattTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTg                                                                        <  1:1296388/140‑1 (MQ=255)
                                                                   tGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGt                                                                    <  2:845483/140‑1 (MQ=255)
                                                                   tGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGt                                                                    <  2:1231263/140‑1 (MQ=255)
                                                                    gCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGtt                                                                   >  1:422544/1‑140 (MQ=255)
                                                                      aTTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTcc                                                                 >  2:1151776/1‑140 (MQ=255)
                                                                        tcctccAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTg                                                               >  1:564059/1‑140 (MQ=255)
                                                                           tccAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCa                                                            >  2:997762/1‑140 (MQ=255)
                                                                               ggAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCa                                                        >  2:9161/1‑140 (MQ=255)
                                                                                    aaTAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGcc                                                   >  1:961058/1‑140 (MQ=255)
                                                                                    aaTAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGcc                                                   <  2:564059/140‑1 (MQ=255)
                                                                                    aaTAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGcc                                                   >  1:690145/1‑140 (MQ=255)
                                                                                     aTAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCg                                                  >  2:525832/1‑140 (MQ=255)
                                                                                        gATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGgtg                                               <  1:1151776/140‑1 (MQ=255)
                                                                                         aTGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGgtgt                                              >  1:127381/1‑140 (MQ=255)
                                                                                           ggAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTg                                            >  1:683125/1‑140 (MQ=255)
                                                                                            gAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTgg                                           <  1:699530/140‑1 (MQ=255)
                                                                                            gAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTgg                                           <  2:870947/140‑1 (MQ=255)
                                                                                              aaCGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCg                                         >  2:380095/1‑140 (MQ=255)
                                                                                              aaCGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAACACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCg                                         >  1:240698/1‑140 (MQ=255)
                                                                                               aCGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCgg                                        <  1:140259/140‑1 (MQ=255)
                                                                                                cGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGt                                       <  1:997762/140‑1 (MQ=255)
                                                                                                 gACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTa                                      <  1:1087336/140‑1 (MQ=255)
                                                                                                  aCTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTAt                                     >  2:1156583/1‑140 (MQ=255)
                                                                                                   cTCAAACCAGTACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATg                                    >  2:1198825/1‑140 (MQ=255)
                                                                                                    tCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGa                                   <  1:1336981/140‑1 (MQ=255)
                                                                                                      aaaCCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATc                                 >  2:269575/1‑140 (MQ=255)
                                                                                                      aaaCCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATc                                 <  1:916233/140‑1 (MQ=255)
                                                                                                      aaaCCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATc                                 <  1:380095/140‑1 (MQ=255)
                                                                                                       aaCCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTAt                                     >  2:632846/1‑135 (MQ=255)
                                                                                                       aaCCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTAt                                     <  1:632846/135‑1 (MQ=255)
                                                                                                       aaCCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATcc                                <  2:961058/140‑1 (MQ=255)
                                                                                                       aaCCAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGAGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATcc                                <  2:1536675/140‑1 (MQ=255)
                                                                                                         ccAGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAACACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCg                              <  2:240698/140‑1 (MQ=255)
                                                                                                           aGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTgg                                           >  1:967674/1‑125 (MQ=255)
                                                                                                           aGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTgg                                           <  2:967674/125‑1 (MQ=255)
                                                                                                           aGCACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCt                            >  1:426233/1‑140 (MQ=255)
                                                                                                             cACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTgg                                           <  1:1569275/123‑1 (MQ=255)
                                                                                                             cACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTgg                                           >  2:1569275/1‑123 (MQ=255)
                                                                                                             cACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGa                          >  2:699163/1‑140 (MQ=255)
                                                                                                             cACGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGa                          >  2:756319/1‑140 (MQ=255)
                                                                                                               cGATTGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGatc                        >  1:1398175/1‑140 (MQ=255)
                                                                                                                  ttGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGatcatc                     >  1:49742/1‑140 (MQ=255)
                                                                                                                  ttGCGTCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGatcatc                     >  2:744263/1‑140 (MQ=255)
                                                                                                                       tCGAAAGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGc                >  1:1412386/1‑140 (MQ=255)
                                                                                                                          aaaGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTAt             <  1:1382652/140‑1 (MQ=255)
                                                                                                                          aaaGACTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTAt             >  2:686203/1‑140 (MQ=255)
                                                                                                                              aCTCTCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCtt         <  1:699163/140‑1 (MQ=255)
                                                                                                                               ctctCGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTg        >  1:1264801/1‑140 (MQ=255)
                                                                                                                                 ctcGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCg      >  1:281861/1‑140 (MQ=255)
                                                                                                                                 ctcGTAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCg      <  2:1387932/140‑1 (MQ=255)
                                                                                                                                     tAGCGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTcc  <  1:9161/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
GATAGACAGATTTCATTTTTACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAACGACTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCC  >  NC_000913/2928140‑2928412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A