Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	224	87.5	2960670	99.3%	2939945	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,940,984	(G)_5→6	coding (260/1101 nt)	rlmM ←	23S rRNA 2'‑O‑ribose C2498 methyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,940,979	1	.	G	94.9%	259.9 / 6.0	79	coding (265/1101 nt)	rlmM	23S rRNA 2'‑O‑ribose C2498 methyltransferase
Reads supporting (aligned to +/- strand): ref base . (2/2); new base G (34/41); total (36/43)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01

CGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑G‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAGGTTGATAACATTC  >  NC_000913/2940841‑2941111

cGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCTGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑g                                                                                                                                       <  1:1005244/140‑1 (MQ=255)

cGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑g                                                                                                                                       <  1:750847/140‑1 (MQ=255)

cGGCATCGCGCAAGACAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑g                                                                                                                                       <  1:381272/140‑1 (MQ=255)

  gCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑g‑gg                                                                                                                                    <  1:913135/140‑1 (MQ=255)

  gCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑g‑gg                                                                                                                                    <  1:1163488/140‑1 (MQ=255)

  gCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACCCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑g‑gg                                                                                                                                    <  1:1471216/140‑1 (MQ=255)

   cATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑g‑ggg                                                                                                                                   <  2:861526/140‑1 (MQ=255)

     tCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑g‑ggggg                                                                                                                                 <  1:1318494/140‑2 (MQ=255)

       gcgcAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑g‑gggggta                                                                                                                               <  1:432595/140‑4 (MQ=255)

       gcgcAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑g‑gggggta                                                                                                                               <  1:469560/140‑4 (MQ=255)

        cgcAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTTGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑g‑gggggtaa                                                                                                                              >  1:1145823/1‑136 (MQ=255)

        cgcAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑g‑gggggtaa                                                                                                                              >  1:212861/1‑136 (MQ=255)

        cgcAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑g‑gggggtaa                                                                                                                              >  1:1230118/1‑136 (MQ=255)

        cgcAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑g‑gg                                                                                                                                    <  2:151410/134‑1 (MQ=255)

        cgcAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑g‑gg                                                                                                                                    >  1:151410/1‑134 (MQ=255)

                  cgcgTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGAtcttc                                                                                                                    >  2:881980/1‑140 (MQ=255)

                    cgTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTg                                                                                                                  <  1:161752/140‑1 (MQ=255)

                          ggAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCa                                                                                                            <  2:1440540/140‑1 (MQ=255)

                            aaCAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCaaa                                                                                                          <  2:1054418/140‑1 (MQ=255)

                            aaCAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCaaa                                                                                                          <  1:1175957/140‑1 (MQ=255)

                            aaCAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCaaa                                                                                                          <  2:705700/140‑1 (MQ=255)

                                 tAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAAtgctg                                                                                                     <  1:1417318/140‑1 (MQ=255)

                                 tAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAAtgctg                                                                                                     >  2:333764/1‑140 (MQ=255)

                                 tAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAAtgctg                                                                                                     >  2:189103/1‑140 (MQ=255)

                                 tAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAAtgctg                                                                                                     <  2:91097/140‑1 (MQ=255)

                                   aaTTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCa                                                                                                   >  2:2767/1‑140 (MQ=255)

                                   aaTTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCa                                                                                                   <  1:191305/140‑1 (MQ=255)

                                           gCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTcc                                                                                           >  1:1393059/1‑140 (MQ=255)

                                             aGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCTGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTcccc                                                                                         >  2:44773/1‑140 (MQ=255)

                                             aGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTcccc                                                                                         <  1:333764/140‑1 (MQ=255)

                                               aaTTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCcca                                                                                       <  1:887212/140‑1 (MQ=255)

                                               aaTTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCcca                                                                                       >  2:222271/1‑140 (MQ=255)

                                                  ttCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCccacca                                                                                    <  1:189103/140‑1 (MQ=255)

                                                            ctTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑GTGGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTg                                                                          >  1:12346/1‑140 (MQ=255)

                                                               tGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCg                                                                       >  2:82756/1‑140 (MQ=255)

                                                                gCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCgg                                                                      <  2:212861/140‑1 (MQ=255)

                                                                     cGTTGGTATCGGCAGCTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCaaa                                                                 <  1:1355969/140‑1 (MQ=255)

                                                                     cGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCaaa                                                                 >  2:958572/1‑140 (MQ=255)

                                                                     cGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCaaa                                                                 >  2:578081/1‑140 (MQ=255)

                                                                       ttGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCaaaaa                                                               >  1:836259/1‑140 (MQ=255)

                                                                       ttGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCaaaaa                                                               <  1:578081/140‑1 (MQ=255)

                                                                          gTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTa                                                            <  1:380259/140‑1 (MQ=255)

                                                                                        aaCACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGc                                              <  1:222271/140‑1 (MQ=255)

                                                                                         acacGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCa                                             <  1:44773/140‑1 (MQ=255)

                                                                                         acacGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCa                                             <  2:448061/140‑1 (MQ=255)

                                                                                            cGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCt                                          <  1:422380/140‑1 (MQ=255)

                                                                                             gCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTc                                         <  1:141807/140‑1 (MQ=255)

                                                                                             gCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTc                                         <  1:1299597/140‑1 (MQ=255)

                                                                                             gCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAAAGAACTGAACGGCAGCTc                                         <  1:124993/140‑1 (MQ=255)

                                                                                              cAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCa                                        >  1:620054/1‑140 (MQ=255)

                                                                                              cAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑GTGGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCa                                        <  2:12346/140‑1 (MQ=255)

                                                                                               aGTTCACCGCCCTTCTCTACTACGCTCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCAc                                       >  2:479605/1‑140 (MQ=255)

                                                                                               aGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCt                                          <  2:1396780/137‑1 (MQ=255)

                                                                                               aGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCt                                          >  1:1396780/1‑137 (MQ=255)

                                                                                               aGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCAc                                       >  2:294947/1‑140 (MQ=255)

                                                                                               aGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCAc                                       >  2:289469/1‑140 (MQ=255)

                                                                                                  tCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGa                                    <  2:1393059/140‑1 (MQ=255)

                                                                                                       gCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGGTTaaa                               >  1:651164/1‑139 (MQ=255)

                                                                                                          cTTCTCTACCAAGCCCTGGAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTa                            <  2:651164/140‑1 (MQ=255)

                                                                                                             ctctACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCg                         <  1:289469/140‑1 (MQ=255)

                                                                                                              tctACTACGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGc                        <  2:1435616/140‑1 (MQ=255)

                                                                                                                  ctacGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTa                            >  2:722978/1‑132 (MQ=255)

                                                                                                                  ctacGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTa                            <  1:722978/132‑1 (MQ=255)

                                                                                                                  ctacGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCcatc                    <  1:82756/140‑1 (MQ=255)

                                                                                                                   taggCCTTGTACCATGCCGACAAT‑G‑GGGGTTAATACGATCTTCTGGGGGCAAATGCTGCAGGAGTT‑CCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCcatcat                  <  1:881980/137‑1 (MQ=255)

                                                                                                                   tacGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCcatca                   >  1:108339/1‑140 (MQ=255)

                                                                                                                   tacGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCcatca                   >  1:671686/1‑140 (MQ=255)

                                                                                                                    acGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCcatcat                  <  2:1189028/140‑1 (MQ=255)

                                                                                                                    acGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCcatcat                  <  1:537567/140‑1 (MQ=255)

                                                                                                                     cGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGCTCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCatcatc                 <  1:958572/140‑1 (MQ=255)

                                                                                                                     cGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGTGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCatcatc                 <  1:131351/140‑1 (MQ=255)

                                                                                                                     cGCCCTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCatcatc                 <  1:1270129/140‑1 (MQ=255)

                                                                                                                       cccTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAg               <  1:677311/140‑1 (MQ=255)

                                                                                                                       cccTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAg               >  2:1148531/1‑140 (MQ=255)

                                                                                                                       cccTGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAg               >  2:582841/1‑140 (MQ=255)

                                                                                                                       cccTGTAACATGCCGACAATGG‑GGGG‑CAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAg               >  2:1235928/1‑140 (MQ=255)

                                                                                                                          tGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAGGtt            >  1:1016433/1‑140 (MQ=255)

                                                                                                                          tGTAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAGGtt            >  1:515991/1‑140 (MQ=255)

                                                                                                                            tAACATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAGGTTGa          <  1:2767/140‑1 (MQ=255)

                                                                                                                            tAACATGCCAACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAGGCTGa          >  2:712596/1‑140 (MQ=255)

                                                                                                                               cATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAGGTTGATaa       <  1:294947/140‑1 (MQ=255)

                                                                                                                               cATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAGGTTGATaa       <  1:582841/140‑1 (MQ=255)

                                                                                                                               cATGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCAACAGGTTGATaa       <  2:1145823/140‑1 (MQ=255)

                                                                                                                                aTGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCatcatc                 >  1:608230/1‑129 (MQ=255)

                                                                                                                                aTGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCatcatc                 <  2:608230/129‑1 (MQ=255)

                                                                                                                                aTGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAGGTTGATAAc      <  1:479605/140‑1 (MQ=255)

                                                                                                                                 tGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAGGTTGATAACa     >  1:413804/1‑140 (MQ=255)

                                                                                                                                 tGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGAAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCatcatc                 <  1:378553/128‑1 (MQ=255)

                                                                                                                                 tGCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGAAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCatcatc                 >  2:378553/1‑128 (MQ=255)

                                                                                                                                 tGCCGACAAT‑G‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAg               >  2:288898/1‑129 (MQ=255)

                                                                                                                                 tGCCGACAAT‑G‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAg               <  1:288898/129‑1 (MQ=255)

                                                                                                                                  gCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAGGTTGATAACAt    >  1:483364/1‑140 (MQ=255)

                                                                                                                                  gCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAGGTTGATAACAt    >  1:1140685/1‑140 (MQ=255)

                                                                                                                                  gCCGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAAGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAGGTTGATAACAt    >  1:1386791/1‑140 (MQ=255)

                                                                                                                                    cGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAGGTTGATAACATTc  >  2:635519/1‑140 (MQ=255)

                                                                                                                                    cGACAATGG‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAGGTTGATAACATTc  >  2:1252454/1‑140 (MQ=255)

CGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAAT‑G‑GGGG‑TAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAGGTTGATAACATTC  >  NC_000913/2940841‑2941111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A