Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 112 94.0 3211786 99.3% 3189303 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,447,157 T→C E94E (GAA→GAG)  rplE ← 50S ribosomal subunit protein L5

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,447,1570TC100.0% 422.8 / NA 117E94E (GAA→GAG) rplE50S ribosomal subunit protein L5
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (65/52);  total (65/52)

Only 100 of 117 total aligned reads displayed.

CTGGGAAGATGATCTGCTCACGGACACCCATGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGTTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGTCTGCTGCTGCGTTATCCA  >  NC_000913/3447021‑3447290
                                                                                                                                        |                                                                                                                                     
cTGGGAAGATGATCTGCTCACGGACACCCATGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCg                                                                                                                                    >  2:856639/1‑140 (MQ=255)
   ggAAGATGATCTGCTCACGGACACCCATGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCa                                                                                                                                 <  1:1059085/140‑1 (MQ=255)
     aaGATGATCTGCTGACGGACACCCATGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACg                                                                                                                               <  1:1369032/140‑1 (MQ=255)
     aaGATGATCTGCTCACGGACACCCATGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACg                                                                                                                               <  2:1480329/140‑1 (MQ=255)
     aaGATGATCTGCTCACGGACACCCATGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACg                                                                                                                               <  2:1571904/140‑1 (MQ=255)
     aaGATGATCTGCTCACGGACACCCATGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACg                                                                                                                               <  2:777736/140‑1 (MQ=255)
           atCTGCTCACGGACACCCATGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGt                                                                                                                         <  2:55943/140‑1 (MQ=255)
               gCTCACGGACACCCATGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACg                                                                                                                               >  1:969811/1‑130 (MQ=255)
                 tCACGGACACCCATGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACttt                                                                                                                   >  2:715060/1‑140 (MQ=255)
                     ggACACCCATGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAg                                                                                                               >  2:526324/1‑140 (MQ=255)
                         acCCATGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGa                                                                                                           <  1:561647/140‑1 (MQ=255)
                         acCCATGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGa                                                                                                           <  1:305555/140‑1 (MQ=255)
                         acCCATGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGa                                                                                                           <  1:1491013/140‑1 (MQ=255)
                          cccATGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCGGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGAt                                                                                                          >  1:580515/1‑140 (MQ=255)
                          cccATGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGAt                                                                                                          >  1:1433072/1‑140 (MQ=255)
                          cccATGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGAt                                                                                                          >  1:1253805/1‑140 (MQ=255)
                              tGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGa                                                                                                      <  2:249045/140‑1 (MQ=255)
                                     gTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCt                                                                                               >  1:546354/1‑140 (MQ=255)
                                        aCCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCGGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGAc                                                                                            <  2:580515/140‑1 (MQ=255)
                                        aCCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGAc                                                                                            <  2:1210597/140‑1 (MQ=255)
                                          cACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACgg                                                                                          >  1:875527/1‑140 (MQ=255)
                                          cACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACgg                                                                                          >  1:543259/1‑140 (MQ=255)
                                          cACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACgg                                                                                          >  1:1288459/1‑140 (MQ=255)
                                          cACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTAC‑TTACCGCCGAACGGATAACCCCGACggg                                                                                         >  2:1309218/1‑139 (MQ=255)
                                           aCGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGa                                                                                         >  2:638006/1‑140 (MQ=255)
                                             gACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGAtt                                                                                       >  2:1170964/1‑140 (MQ=255)
                                             gACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGAtt                                                                                       >  2:798652/1‑140 (MQ=255)
                                             gACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGAtt                                                                                       >  1:1373117/1‑140 (MQ=255)
                                                  tCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGaa                                                                                  <  2:734496/140‑1 (MQ=255)
                                                     aaaGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGcc                                                                               <  2:1288459/140‑1 (MQ=255)
                                                     aaaGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGcc                                                                               <  1:856639/140‑1 (MQ=255)
                                                     aaaGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGcc                                                                               <  2:875527/140‑1 (MQ=255)
                                                       aGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTg                                                                             <  1:715060/140‑1 (MQ=255)
                                                            tAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACa                                                                        >  1:2469/1‑140 (MQ=255)
                                                            tAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACa                                                                        >  1:1367451/1‑140 (MQ=255)
                                                            tAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACa                                                                        >  1:499640/1‑140 (MQ=255)
                                                             aGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAg                                                                       >  2:156155/1‑140 (MQ=255)
                                                                 gACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGAttt                                                                   <  1:796190/140‑1 (MQ=255)
                                                                  aCAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTg                                                                  >  2:1094130/1‑140 (MQ=255)
                                                                  aCAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTg                                                                  <  1:1170964/140‑1 (MQ=255)
                                                                   cAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGc                                                                 >  1:548966/1‑140 (MQ=255)
                                                                   cAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGc                                                                 <  1:798652/140‑1 (MQ=255)
                                                                    aGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCg                                                                <  2:1373117/140‑1 (MQ=255)
                                                                    aGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCg                                                                <  2:1050197/140‑1 (MQ=255)
                                                                    aGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCg                                                                <  2:237312/140‑1 (MQ=255)
                                                                    aGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCg                                                                <  1:88315/140‑1 (MQ=255)
                                                                    aGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCg                                                                <  2:150535/140‑1 (MQ=255)
                                                                    aGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCg                                                                <  1:1478374/140‑1 (MQ=255)
                                                                    aGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCg                                                                <  1:638006/140‑1 (MQ=255)
                                                                    aGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCg                                                                <  2:628166/140‑1 (MQ=255)
                                                                    aGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCg                                                                <  1:636454/140‑1 (MQ=255)
                                                                      gCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTg                                                              <  2:537696/140‑1 (MQ=255)
                                                                      gCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTAGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTg                                                              <  2:1411901/140‑1 (MQ=255)
                                                                        cACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCt                                                            <  2:1253805/140‑1 (MQ=255)
                                                                         aCGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCtt                                                           <  2:1301721/140‑1 (MQ=255)
                                                                           ggAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTg                                                         >  2:1005559/1‑140 (MQ=255)
                                                                                tCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCg                                                                <  1:527829/128‑1 (MQ=255)
                                                                                tCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCg                                                                >  2:527829/1‑128 (MQ=255)
                                                                                tCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGAt                                                    <  2:1029943/140‑1 (MQ=255)
                                                                                tCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGAt                                                    >  2:550371/1‑140 (MQ=255)
                                                                                         cGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGttt                                           >  1:1118483/1‑140 (MQ=255)
                                                                                                cAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCg                                    >  2:1321149/1‑140 (MQ=255)
                                                                                                cAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCg                                    >  1:1499755/1‑140 (MQ=255)
                                                                                                    aaTAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGgaga                                <  1:706435/140‑1 (MQ=255)
                                                                                                      tAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGAtt                              >  2:1362341/1‑140 (MQ=255)
                                                                                                      tAGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGAtt                              >  1:1583413/1‑140 (MQ=255)
                                                                                                       aGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATtg                             >  2:397024/1‑140 (MQ=255)
                                                                                                       aGTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATtg                             >  1:226463/1‑140 (MQ=255)
                                                                                                        gTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGATCGGAGATtgc                            >  2:930401/1‑140 (MQ=255)
                                                                                                        gTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATtgc                            >  1:1182640/1‑140 (MQ=255)
                                                                                                        gTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATtgc                            >  1:538550/1‑140 (MQ=255)
                                                                                                        gTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATtgc                            >  2:50574/1‑140 (MQ=255)
                                                                                                        gTGATCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATtgc                            >  2:378164/1‑140 (MQ=255)
                                                                                                           aTCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGAtt                              >  2:839617/1‑135 (MQ=255)
                                                                                                           aTCAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGAtt                              <  1:839617/135‑1 (MQ=255)
                                                                                                             cAGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCa                       >  1:1089857/1‑140 (MQ=255)
                                                                                                              aGGCGCTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAg                      >  1:465607/1‑140 (MQ=255)
                                                                                                                gcgcTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGcc                        >  2:763011/1‑136 (MQ=255)
                                                                                                                gcgcTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGcc                        <  1:763011/136‑1 (MQ=255)
                                                                                                                gcgcTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGcc                        >  2:380882/1‑136 (MQ=255)
                                                                                                                gcgcTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCCGGt                    >  1:770665/1‑140 (MQ=255)
                                                                                                                gcgcTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGt                    >  1:484923/1‑140 (MQ=255)
                                                                                                                gcgcTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGt                    <  2:79390/140‑1 (MQ=255)
                                                                                                                gcgcTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGt                    <  1:397024/140‑1 (MQ=255)
                                                                                                                gcgcTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGt                    >  2:1491125/1‑140 (MQ=255)
                                                                                                                gcgcTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGt                    >  1:821228/1‑140 (MQ=255)
                                                                                                                 cgcTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGTc                   <  2:548966/140‑1 (MQ=255)
                                                                                                                 cgcTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGTc                   >  2:286902/1‑140 (MQ=255)
                                                                                                                 cgcTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGTc                   <  1:378164/140‑1 (MQ=255)
                                                                                                                 cgcTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGTc                   <  2:499640/140‑1 (MQ=255)
                                                                                                                   cTCAAAGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGTctg                 >  1:885616/1‑140 (MQ=255)
                                                                                                                      aaaGAACTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGTctgctg              <  2:313472/140‑1 (MQ=255)
                                                                                                                          aaCTCCCACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGTCtgctgctgc          >  1:1447756/1‑140 (MQ=255)
                                                                                                                              cccACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGCGATTGCTGCCAGGTCTGCTGCTGCGTTa      >  1:1330356/1‑140 (MQ=255)
                                                                                                                              cccACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGTCTGCTGCTGCGTTa      >  1:484984/1‑140 (MQ=255)
                                                                                                                              cccACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGTCTGCTGCTGCGTTa      >  1:1533968/1‑140 (MQ=255)
                                                                                                                              cccACATGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGTCTGCTGCTGCGTTa      >  1:290421/1‑140 (MQ=255)
                                                                                                                                cacaTGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGTCTGCTGCTGCGTTATc    >  1:1090661/1‑140 (MQ=255)
                                                                                                                                cacaTGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGTCTGCTGCTGCGTTATc    <  2:1118483/140‑1 (MQ=255)
                                                                                                                                  caTGCGCTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGTCTGCTGCTGCGTTATCca  >  2:706456/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                     
CTGGGAAGATGATCTGCTCACGGACACCCATGCTGTAGTTACCACGACCGTCGAAAGACTTAGCGGACAGGCCACGGAAGTCACGGATACGAGGTACAGCAATAGTGATCAGGCGCTCAAAGAACTCCCACATGCGTTCGCCACGCAGAGTTACTTTACAGCCGATCGGATAGCCCTGACGGATTTTGAAGCCTGCAACAGATTTGCGTGCTTTGGTGATCAGCGGTTTTTGACCGGAGATTGCTGCCAGGTCTGCTGCTGCGTTATCCA  >  NC_000913/3447021‑3447290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A