Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 112 94.0 3211786 99.3% 3189303 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,598,550 A→G intergenic (+183/+5) panZ → / ← livJ PanD maturation factor/branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,598,5500AG100.0% 314.7 / NA 86intergenic (+183/+5)panZ/livJPanD maturation factor/branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (45/41);  total (45/41)

TCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTACGGTATCCACGGAGTTCGCTTTCAGGTAT  >  NC_000913/3598416‑3598684
                                                                                                                                      |                                                                                                                                      
tCAGGCCTACAATGTGTGTTACAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTgatgat                                                                                                                                   <  1:1269161/140‑1 (MQ=255)
    gCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACt                                                                                                                               >  1:1536456/1‑140 (MQ=255)
       tACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCg                                                                                                                            >  1:305052/1‑140 (MQ=255)
         cAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCa                                                                                                                          >  2:188705/1‑140 (MQ=255)
          aaTGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCAt                                                                                                                         <  2:591629/140‑1 (MQ=255)
             gtgtgtTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCgg                                                                                                                      <  2:305052/140‑1 (MQ=255)
              tgtgtTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCAt                                                                                                                         >  2:363200/1‑136 (MQ=255)
              tgtgtTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCAt                                                                                                                         <  1:363200/136‑1 (MQ=255)
              tgtgtTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGt                                                                                                                     >  2:1533440/1‑140 (MQ=255)
              tgtgtTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGt                                                                                                                     >  1:446094/1‑140 (MQ=255)
              tgtgtTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGt                                                                                                                     >  1:1337138/1‑140 (MQ=255)
              tgtgtTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGt                                                                                                                     >  2:393595/1‑140 (MQ=255)
              tgtgtTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGt                                                                                                                     >  2:240827/1‑140 (MQ=255)
               gtgtTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTc                                                                                                                    >  1:950362/1‑140 (MQ=255)
                 gtTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCgc                                                                                                                  >  2:1505976/1‑140 (MQ=255)
                  ttGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCgcc                                                                                                                 >  1:784739/1‑140 (MQ=255)
                   tGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATc                                                                                                                        <  2:348900/132‑1 (MQ=255)
                   tGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATc                                                                                                                        >  1:348900/1‑132 (MQ=255)
                   tGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCgccg                                                                                                                <  1:188705/140‑1 (MQ=255)
                   tGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCgccg                                                                                                                >  1:756673/1‑140 (MQ=255)
                   tGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCgccg                                                                                                                <  2:1337138/140‑1 (MQ=255)
                   tGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCgccg                                                                                                                <  2:446094/140‑1 (MQ=255)
                   tGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCgccg                                                                                                                <  1:1505976/140‑1 (MQ=255)
                     cAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCgccgtg                                                                                                              >  1:159003/1‑140 (MQ=255)
                        tttACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCgccgtgccg                                                                                                           >  1:621600/1‑140 (MQ=255)
                        tttACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCgccgtgccg                                                                                                           >  2:103184/1‑140 (MQ=255)
                              gATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCg                                                                                                     <  1:240827/140‑1 (MQ=255)
                                   cTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCa                                                                                                <  1:391378/140‑1 (MQ=255)
                                   cTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCa                                                                                                <  1:103184/140‑1 (MQ=255)
                                        gATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCaa                                                                                           <  2:214616/140‑1 (MQ=255)
                                              gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGc                                                                                     >  2:2042/1‑140 (MQ=255)
                                                aGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCg                                                                                   <  1:1533440/140‑1 (MQ=255)
                                                  gCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGaa                                                                                 >  1:636837/1‑140 (MQ=255)
                                                    cGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACt                                                                               <  2:1484203/140‑1 (MQ=255)
                                                      gATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCa                                                                             >  2:409338/1‑140 (MQ=255)
                                                      gATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCa                                                                             >  1:270754/1‑140 (MQ=255)
                                                      gATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCa                                                                             >  2:1278612/1‑140 (MQ=255)
                                                       aTAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCaa                                                                            >  1:1015746/1‑140 (MQ=255)
                                                       aTAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCaa                                                                            >  2:1467172/1‑140 (MQ=255)
                                                       aTAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGAGTGCCAGTCAAATACGCCGAACTCaa                                                                            >  1:709553/1‑140 (MQ=255)
                                                        tAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCaaa                                                                           <  2:570365/140‑1 (MQ=255)
                                                            gCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCt                                                                       >  2:982356/1‑140 (MQ=255)
                                                            gCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCt                                                                       <  1:393595/140‑1 (MQ=255)
                                                                ttACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCa                                                                   >  2:268074/1‑140 (MQ=255)
                                                                ttACGCCGCATCCGGCATGAAGCAACGTACTCGATATCAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCa                                                                   >  1:94298/1‑140 (MQ=255)
                                                                  aCGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGa                                                                 <  2:159003/140‑1 (MQ=255)
                                                                       gcATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGcc                                                            <  2:636837/140‑1 (MQ=255)
                                                                       gcATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATAGcc                                                            <  1:1467172/140‑1 (MQ=255)
                                                                        cATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCt                                                           >  1:1080479/1‑140 (MQ=255)
                                                                        cATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCt                                                           >  1:1434502/1‑140 (MQ=255)
                                                                         aTCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCtt                                                          >  2:514488/1‑140 (MQ=255)
                                                                            cGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTtct                                                       <  2:393437/140‑1 (MQ=255)
                                                                            cGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTtct                                                       <  2:1080479/140‑1 (MQ=255)
                                                                            cGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTtct                                                       <  2:756673/140‑1 (MQ=255)
                                                                            cGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTtct                                                       <  1:268074/140‑1 (MQ=255)
                                                                                 tGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATcc                                                  <  2:784739/140‑1 (MQ=255)
                                                                                 tGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATcc                                                  <  2:809969/140‑1 (MQ=255)
                                                                                         cGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAg                                          <  1:409338/140‑1 (MQ=255)
                                                                                           tACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGc                                         >  1:1581992/1‑139 (MQ=255)
                                                                                           tACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGc                                         <  2:1581992/139‑1 (MQ=255)
                                                                                            aCTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCgg                                       <  2:1434502/140‑1 (MQ=255)
                                                                                            aCTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCgg                                       <  2:621600/140‑1 (MQ=255)
                                                                                            aCTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCgg                                       <  1:1173144/140‑1 (MQ=255)
                                                                                             cTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGt                                      >  1:470772/1‑140 (MQ=255)
                                                                                              tCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTc                                     <  1:514488/140‑1 (MQ=255)
                                                                                                    ttAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTa                               >  1:1013160/1‑140 (MQ=255)
                                                                                                     tAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCgg                                       >  2:283374/1‑131 (MQ=255)
                                                                                                     tAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCgg                                       <  1:283374/131‑1 (MQ=255)
                                                                                                     tAGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTAc                              >  1:544031/1‑140 (MQ=255)
                                                                                                      aGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTACg                             <  1:563296/140‑1 (MQ=255)
                                                                                                      aGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTACg                             >  2:563296/1‑140 (MQ=255)
                                                                                                      aGCAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTACg                             >  2:606913/1‑140 (MQ=255)
                                                                                                        cAATTTGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTACGGt                           <  2:1013160/140‑1 (MQ=255)
                                                                                                            ttGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCa                                  >  1:735474/1‑129 (MQ=255)
                                                                                                            ttGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCa                                  <  2:735474/129‑1 (MQ=255)
                                                                                                            ttGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTACgg                            >  1:823066/1‑135 (MQ=255)
                                                                                                            ttGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTACgg                            <  2:823066/135‑1 (MQ=255)
                                                                                                            ttGGCGGCAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTACGGTATcc                       >  2:576154/1‑140 (MQ=255)
                                                                                                              ggcggcAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTACGGTATCCAc                     >  2:1553585/1‑140 (MQ=255)
                                                                                                               gcggcAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTACGGTATCCACg                    <  1:576154/140‑1 (MQ=255)
                                                                                                               gcggcAACCCAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTACGGTATCCACg                    <  2:1536456/140‑1 (MQ=255)
                                                                                                                      cccAAAGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTACGGTATCCACGGAGTTCg             <  2:759337/140‑1 (MQ=255)
                                                                                                                          aaGTTGCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTACGGTATCCACGGAGTTCGCttt         <  1:982356/140‑1 (MQ=255)
                                                                                                                               gCCGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTACGGTATCCACGGAGTTCGCTTTCAGGt    >  2:481642/1‑140 (MQ=255)
                                                                                                                                ccGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTACGGTATCCACGGAGTTCGCTTTCAGGTa   >  2:770539/1‑140 (MQ=255)
                                                                                                                                ccGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTACGGTATCCACGGAGTTCGCTTTCAGGTa   >  1:1540750/1‑140 (MQ=255)
                                                                                                                                 cGATTGATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTACGGTATCCACGGAGTTCGCTTTCAGGTAt  <  2:26900/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                      
TCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCAGATCGCCTTTCTCATCCCAGGTCAGCGGTCCCATTACGGTATCCACGGAGTTCGCTTTCAGGTAT  >  NC_000913/3598416‑3598684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A