Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 112 94.0 3211786 99.3% 3189303 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,859,745 G→A C124C (TGC→TGT)  yidK ← putative transporter YidK

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,859,7450GA100.0% 213.9 / NA 60C124C (TGC→TGT) yidKputative transporter YidK
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (25/35);  total (25/35)

GCAAAATTACCAGTAGCCAGATAGCCGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGT  >  NC_000913/3859609‑3859876
                                                                                                                                        |                                                                                                                                   
gCAAAATTACCAGTAGCCAGATAGCCGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAg                                                                                                                                  <  2:798274/140‑1 (MQ=255)
  aaaaTTACCAGTAGCCAGATAGCCGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGaa                                                                                                                                <  1:1140790/140‑1 (MQ=255)
     aTTACCAGTAGCCAGATAGCCGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTc                                                                                                                             <  1:593094/140‑1 (MQ=255)
     aTTACCAGTAGCCAGATAGCCGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTc                                                                                                                             <  1:1272586/140‑1 (MQ=255)
       tACCAGTAGCCAGATAGCCGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCga                                                                                                                           <  1:1191123/140‑1 (MQ=255)
       tACCAGTAGCCAGATAGCCGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCga                                                                                                                           <  1:1474312/140‑1 (MQ=255)
        aCCAGTAGCCAGATAGCCGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCgat                                                                                                                          <  2:626418/140‑1 (MQ=255)
          cAGTAGCCAGATAGCCGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCgatga                                                                                                                        >  2:1286700/1‑140 (MQ=255)
              aGCCAGATAGCCGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGataat                                                                                                                    >  2:1558494/1‑140 (MQ=255)
              aGCCAGATAGCCGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGataat                                                                                                                    >  1:288396/1‑140 (MQ=255)
              aGCCAGATAGCCGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGataat                                                                                                                    >  2:1411783/1‑140 (MQ=255)
              aGCCAGATAGCCGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGataat                                                                                                                    >  1:698126/1‑140 (MQ=255)
                  aGATAGCCGCACCGTGAGAAATCTGTAGCGATTGCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATAcgc                                                                                                                <  2:1051373/140‑1 (MQ=255)
                   gATAGCCGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATAcgcg                                                                                                               <  1:1411783/140‑1 (MQ=255)
                        ccGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGcgtcgt                                                                                                           <  1:849138/139‑1 (MQ=255)
                        ccGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGcgtcgt                                                                                                           >  2:849138/1‑139 (MQ=255)
                        ccGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGtt                                                                                                          <  1:1462335/140‑1 (MQ=255)
                        ccGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGtt                                                                                                          <  1:191966/140‑1 (MQ=255)
                        ccGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGtt                                                                                                          <  1:535937/140‑1 (MQ=255)
                         cGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGttt                                                                                                         >  2:1274094/1‑140 (MQ=255)
                         cGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGttt                                                                                                         <  2:1529051/140‑1 (MQ=255)
                             ccGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATc                                                                                                     >  2:462505/1‑140 (MQ=255)
                              cGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCa                                                                                                    >  1:860970/1‑140 (MQ=255)
                               gTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCAt                                                                                                   <  2:174845/140‑1 (MQ=255)
                                      aTCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTtc                                                                                            <  2:288396/140‑1 (MQ=255)
                                         tGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTtcctc                                                                                         >  1:1211126/1‑140 (MQ=255)
                                          gTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATAGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTtcctcc                                                                                        >  2:1434196/1‑140 (MQ=255)
                                           tAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCa                                                                                       <  1:1434196/140‑1 (MQ=255)
                                             gCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGa                                                                                     <  2:376445/140‑1 (MQ=255)
                                                 ttCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAAt                                                                                 >  1:1134747/1‑140 (MQ=255)
                                                  tCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATc                                                                                >  2:573627/1‑140 (MQ=255)
                                                  tCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATc                                                                                <  1:834270/140‑1 (MQ=255)
                                                  tCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATc                                                                                >  1:1444181/1‑140 (MQ=255)
                                                   ccccGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCg                                                                               >  2:140578/1‑140 (MQ=255)
                                                   ccccGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCg                                                                               <  1:1558494/140‑1 (MQ=255)
                                                      cGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCgggg                                                                            <  1:1286700/140‑1 (MQ=255)
                                                        aCGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGAt                                                                          <  2:1134747/140‑1 (MQ=255)
                                                        aCGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGAt                                                                          <  1:462505/140‑1 (MQ=255)
                                                             aaaCAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGAtggtgg                                                                     >  2:1322367/1‑140 (MQ=255)
                                                                    cTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGcc                                                              <  2:1211126/140‑1 (MQ=255)
                                                                    cTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGcc                                                              <  1:923825/140‑1 (MQ=255)
                                                                    cTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGcc                                                              <  1:1322367/140‑1 (MQ=255)
                                                                      gTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCcgc                                                            <  2:1487634/140‑1 (MQ=255)
                                                                       ttGAGCGCCAACGCACCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCcgcg                                                           >  2:1182152/1‑140 (MQ=255)
                                                                             gcCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAg                                                     >  2:536129/1‑140 (MQ=255)
                                                                                   gcgcCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAgcg                                               <  2:93017/140‑1 (MQ=255)
                                                                                    cgcCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAgcgc                                              <  1:536129/140‑1 (MQ=255)
                                                                                     gcCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGcgcg                                             <  2:698126/140‑1 (MQ=255)
                                                                                                    aaTCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAgcg                              >  1:1138947/1‑140 (MQ=255)
                                                                                                      tCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGcgcg                            >  2:1261640/1‑140 (MQ=255)
                                                                                                      tCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGcgcg                            >  2:1247191/1‑140 (MQ=255)
                                                                                                           aGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAgcg                              >  2:988569/1‑133 (MQ=255)
                                                                                                           aGAAAGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAgcg                              <  1:988569/133‑1 (MQ=255)
                                                                                                             aaaGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGa                     >  1:94965/1‑140 (MQ=255)
                                                                                                              aaGCAGACGCCGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGAt                    <  1:1274094/140‑1 (MQ=255)
                                                                                                                       ccGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAg                          <  1:86397/125‑1 (MQ=255)
                                                                                                                       ccGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAg                          >  2:86397/1‑125 (MQ=255)
                                                                                                                       ccGGTGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCAc           >  1:1462027/1‑140 (MQ=255)
                                                                                                                           tGGCAATTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCt       <  1:1261640/140‑1 (MQ=255)
                                                                                                                                aTTAGGAAACAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGt  <  2:860970/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                   
GCAAAATTACCAGTAGCCAGATAGCCGCACCGTGAGAAATCTGTAGCGATTCCCCGACGTGAAACAGGCTGTTGAGCGCCAACGCGCCGGAGTAGAGAACAATCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGT  >  NC_000913/3859609‑3859876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A