Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 112 94.0 3211786 99.3% 3189303 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,056,607 C→T intergenic (‑268/+18) glnL ← / ← glnA sensory histidine kinase NtrB/glutamine synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,056,6070CT100.0% 284.0 / NA 79intergenic (‑268/+18)glnL/glnAsensory histidine kinase NtrB/glutamine synthetase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (36/43);  total (36/43)

CGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCA  >  NC_000913/4056474‑4056739
                                                                                                                                     |                                                                                                                                    
cGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGc                                                                                                                                <  2:1368804/140‑1 (MQ=255)
     gagaGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTa                                                                                                                           <  1:1157442/140‑1 (MQ=255)
            aCTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACt                                                                                                                    >  1:1042381/1‑140 (MQ=255)
             cTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACtt                                                                                                                   >  2:1361937/1‑140 (MQ=255)
                aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGa                                                                                                                <  1:428438/140‑1 (MQ=255)
                aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGa                                                                                                                <  2:1285681/140‑1 (MQ=255)
                aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGa                                                                                                                <  1:1199016/140‑1 (MQ=255)
                aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGa                                                                                                                <  2:533796/140‑1 (MQ=255)
                aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGa                                                                                                                <  1:124825/140‑1 (MQ=255)
                aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGa                                                                                                                <  2:141353/140‑1 (MQ=255)
                  cTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGa                                                                                                                >  1:194298/1‑138 (MQ=255)
                  cTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGa                                                                                                                <  2:194298/138‑1 (MQ=255)
                  cTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACg                                                                                                              <  1:1365638/140‑1 (MQ=255)
                   tGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGc                                                                                                             <  1:321469/140‑1 (MQ=255)
                     cTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGa                                                                                                                >  2:515344/1‑135 (MQ=255)
                     cTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGa                                                                                                                <  1:515344/135‑1 (MQ=255)
                     cTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTg                                                                                                           >  2:705482/1‑140 (MQ=255)
                       ccGGCCTACCACATCATCA‑CGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTgtag                                                                                                        >  1:135159/1‑140 (MQ=255)
                          gCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACg                                                                                                              >  1:950952/1‑132 (MQ=255)
                          gCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACg                                                                                                              <  2:950952/132‑1 (MQ=255)
                          gCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTgtagta                                                                                                      >  2:1240804/1‑140 (MQ=255)
                          gCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTgtagta                                                                                                      >  2:1000561/1‑140 (MQ=255)
                          gCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTgtagta                                                                                                      <  1:1030488/140‑1 (MQ=255)
                           ccTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTAc                                                                                                     >  2:1051460/1‑140 (MQ=255)
                               ccACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGa                                                                                                                >  1:1359305/1‑125 (MQ=255)
                               ccACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGa                                                                                                                <  2:1359305/125‑1 (MQ=255)
                                cacaTCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTc                                                                                                <  1:641074/140‑1 (MQ=255)
                                   atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCaaa                                                                                             <  2:62720/140‑1 (MQ=255)
                                   atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCaaa                                                                                             <  1:91419/140‑1 (MQ=255)
                                     catcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAAct                                                                                           >  1:1297754/1‑140 (MQ=255)
                                     catcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAAct                                                                                           >  1:186436/1‑140 (MQ=255)
                                        caCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTa                                                                                        <  2:900201/140‑1 (MQ=255)
                                         aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTAc                                                                                       >  1:295100/1‑140 (MQ=255)
                                         aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTAc                                                                                       <  1:1240804/140‑1 (MQ=255)
                                          ccGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTAcc                                                                                      <  1:1486595/140‑1 (MQ=255)
                                             tgtAGGCCGGATAAGACGCATTTGCGTCGCATCCNGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGa                                                                                   >  1:222301/1‑140 (MQ=255)
                                             tgtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGa                                                                                   >  2:1501350/1‑140 (MQ=255)
                                             tgtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGa                                                                                   >  2:479342/1‑140 (MQ=255)
                                             tgtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGa                                                                                   >  2:961731/1‑140 (MQ=255)
                                             tgtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGa                                                                                   >  1:960837/1‑140 (MQ=255)
                                               tAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATg                                                                                 <  1:1573407/140‑1 (MQ=255)
                                               tAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATg                                                                                 >  1:1158991/1‑140 (MQ=255)
                                               tAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATg                                                                                 >  1:1402550/1‑140 (MQ=255)
                                                aGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGc                                                                                <  1:961731/140‑1 (MQ=255)
                                                        tAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCAt                                                                        <  1:1501350/140‑1 (MQ=255)
                                                            aCGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATacgc                                                                    <  1:1281989/140‑1 (MQ=255)
                                                            aCGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATacgc                                                                    >  1:446496/1‑140 (MQ=255)
                                                             cGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATacgca                                                                   <  1:254504/140‑1 (MQ=255)
                                                             cGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATacgca                                                                   <  1:1383961/140‑1 (MQ=255)
                                                               cATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATacgcacg                                                                 <  2:295100/140‑1 (MQ=255)
                                                               cATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATacgcacg                                                                 <  2:1158991/140‑1 (MQ=255)
                                                                              cGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTcg                                                  <  2:135159/140‑1 (MQ=255)
                                                                                     aTGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCa                                           <  1:1051460/140‑1 (MQ=255)
                                                                                       gtgCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCaga                                         <  1:705482/140‑1 (MQ=255)
                                                                                        tgCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGTATCCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCagag                                        <  2:1297754/140‑1 (MQ=255)
                                                                                        tgCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCagag                                        <  2:934302/140‑1 (MQ=255)
                                                                                        tgCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCagag                                        <  2:446496/140‑1 (MQ=255)
                                                                                             gCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATg                                   <  2:1042381/140‑1 (MQ=255)
                                                                                             gCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATg                                   <  1:660234/140‑1 (MQ=255)
                                                                                             gCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATg                                   <  2:960837/140‑1 (MQ=255)
                                                                                             gCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATg                                   >  1:1290175/1‑140 (MQ=255)
                                                                                                aCCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTAc                                >  1:722939/1‑140 (MQ=255)
                                                                                                aCCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTAc                                <  2:1402550/140‑1 (MQ=255)
                                                                                                    aTCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCAt                            >  2:1298379/1‑140 (MQ=255)
                                                                                                         aGGCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCATCAAtt                       >  2:700925/1‑140 (MQ=255)
                                                                                                           gCCTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGc                     <  1:1298379/140‑1 (MQ=255)
                                                                                                             cTGCCAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCtt                   <  1:1361937/140‑1 (MQ=255)
                                                                                                                ccAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCATCGATTGCTTCGt                >  2:206017/1‑140 (MQ=255)
                                                                                                                ccAGAGACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGt                >  2:1189226/1‑140 (MQ=255)
                                                                                                                  agagACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCa              <  2:186436/140‑1 (MQ=255)
                                                                                                                  agagACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCa              >  1:1328047/1‑140 (MQ=255)
                                                                                                                  agagACAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCa              <  2:1290175/140‑1 (MQ=255)
                                                                                                                    agaCAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGt            >  1:437939/1‑140 (MQ=255)
                                                                                                                     gaCAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTg           >  1:1163838/1‑140 (MQ=255)
                                                                                                                     gaCAGGCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTg           >  1:718369/1‑140 (MQ=255)
                                                                                                                         ggCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAaca       >  1:613625/1‑140 (MQ=255)
                                                                                                                          gCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAacac      >  1:651008/1‑140 (MQ=255)
                                                                                                                          gCGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAacac      >  2:974548/1‑140 (MQ=255)
                                                                                                                           cGAAAAGTTTTCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACg     >  2:760291/1‑140 (MQ=255)
                                                                                                                                  ttttCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCa  <  2:906883/136‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                    
CGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCTCAAACTCTACCGGATGCGGAGTCATACGCACGCGGTCATCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCA  >  NC_000913/4056474‑4056739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A