Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 112 94.0 3211786 99.3% 3189303 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,280,799 A→G T274A (ACC→GCC)  yjcE → putative transporter YjcE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,280,7990AG100.0% 270.2 / NA 76T274A (ACC→GCC) yjcEputative transporter YjcE
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (36/40);  total (36/40)

TGCCATTCGCTTCTTATCTGATTGCCGAACATATTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCACCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCTAACGTCGAAATCTGGATGCTGT  >  NC_000913/4280662‑4280928
                                                                                                                                         |                                                                                                                                 
tgcCATTCGCTTCTTATCTGATTGCCGAACATATTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGcc                                                                                                                                 >  1:809490/1‑140 (MQ=255)
tgcCATTCGCTTCTTATCTGATTGCCGAACATATTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGcc                                                                                                                                 >  1:1580800/1‑140 (MQ=255)
 gcCATTCGCTTCTTATCTGATTGCCGAACATATTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCt                                                                                                                                >  1:805006/1‑140 (MQ=255)
   cATTCGCTTCTTATCTGATTGCCGAACATATTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTgg                                                                                                                              >  2:254276/1‑140 (MQ=255)
    aTTCGCTTCTTATCTGATTGCCGAACATATTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTggg                                                                                                                             <  1:587519/140‑1 (MQ=255)
            cttATCTGATTGCCGAACATATTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCta                                                                                                                     >  2:817284/1‑139 (MQ=255)
            cttATCTGATTGCCGAACATATTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTg                                                                                                                     >  2:646405/1‑140 (MQ=255)
                 cTGATTGCCGAACATATTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCACTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAAtt                                                                                                                <  1:1401291/140‑1 (MQ=255)
                  tGATTGCCGAACATATTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAAttt                                                                                                               >  1:1351811/1‑140 (MQ=255)
                    aTTGCCGAACATATTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGt                                                                                                             >  2:281011/1‑140 (MQ=255)
                       gCCGAACATATTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCtt                                                                                                          >  1:1462128/1‑140 (MQ=255)
                        ccGAACATATTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCttt                                                                                                         >  1:446861/1‑140 (MQ=255)
                         cGAACATATTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTa                                                                                                        <  2:1580800/140‑1 (MQ=255)
                          gAACATATTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTaa                                                                                                       <  2:1511134/140‑1 (MQ=255)
                           aaCATATTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAAc                                                                                                      >  1:1394940/1‑140 (MQ=255)
                             cATATTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCGCCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACgg                                                                                                    <  1:592263/140‑1 (MQ=255)
                               tatTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCa                                                                                                  <  2:120451/140‑1 (MQ=255)
                                     cGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGgtgt                                                                                            >  1:1325299/1‑140 (MQ=255)
                                       tttCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTc                                                                                          >  1:1441942/1‑140 (MQ=255)
                                       tttCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTc                                                                                          <  1:736296/140‑1 (MQ=255)
                                        ttCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATgg                                                                                               >  2:729170/1‑134 (MQ=255)
                                        ttCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATgg                                                                                               <  1:729170/134‑1 (MQ=255)
                                        ttCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTcc                                                                                         <  2:1462128/140‑1 (MQ=255)
                                         tctggCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCct                                                                                        >  2:1358683/4‑140 (MQ=255)
                                          ccGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCctg                                                                                       <  2:216896/140‑1 (MQ=255)
                                              cATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGt                                                                                   <  1:1540066/140‑1 (MQ=255)
                                              cATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGt                                                                                   <  2:1394940/140‑1 (MQ=255)
                                              cATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTAGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGt                                                                                   <  1:817284/140‑1 (MQ=255)
                                               aTCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGtt                                                                                  <  1:1409812/140‑1 (MQ=255)
                                                           gTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCt                                                                      <  1:1358683/140‑1 (MQ=255)
                                                           gTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCt                                                                      <  1:281011/140‑1 (MQ=255)
                                                              gccgccGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGcc                                                                   <  1:1163446/140‑1 (MQ=255)
                                                              gccgccGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGcc                                                                   >  2:1364644/1‑140 (MQ=255)
                                                              gccgccGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGcc                                                                   >  2:1226679/1‑140 (MQ=255)
                                                              gccgccGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGcc                                                                   <  2:1325299/140‑1 (MQ=255)
                                                                cgccgGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCgg                                                                 <  2:1441942/140‑1 (MQ=255)
                                                                          aCCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGga                                                       >  1:675152/1‑140 (MQ=255)
                                                                          aCCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGga                                                       >  2:139157/1‑140 (MQ=255)
                                                                           ccATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGgag                                                      <  1:1226679/140‑1 (MQ=255)
                                                                           ccATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGgag                                                      <  2:805006/140‑1 (MQ=255)
                                                                                   cGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCt                                              <  1:658445/140‑1 (MQ=255)
                                                                                     cTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGa                                            >  2:415920/1‑140 (MQ=255)
                                                                                     cTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGa                                            >  2:431283/1‑140 (MQ=255)
                                                                                     cTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGa                                            >  2:616806/1‑140 (MQ=255)
                                                                                         ggTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGgc                                        >  1:1302896/1‑140 (MQ=255)
                                                                                         ggTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGgc                                        >  2:1197264/1‑140 (MQ=255)
                                                                                         ggTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGgc                                        >  1:375822/1‑140 (MQ=255)
                                                                                          gtgtGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGgca                                       >  1:528005/1‑140 (MQ=255)
                                                                                            gtgATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGgcagc                                     >  2:245845/1‑140 (MQ=255)
                                                                                            gtgATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGAATTCTGGAGACGTCGCTGATGgcagc                                     >  1:1322841/1‑140 (MQ=255)
                                                                                                tgcgccgtgcgccgCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGgcag                                      <  2:1166018/135‑1 (MQ=255)
                                                                                                tgcgccgtgcgccgCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGgcag                                      >  1:1166018/1‑135 (MQ=255)
                                                                                                tgcgccgtgcgccgCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGaa                                 >  1:346303/1‑140 (MQ=255)
                                                                                                  cgccgtgcgccgCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAAt                               >  1:1095983/1‑140 (MQ=255)
                                                                                                    ccgtgcgccgCTGGCAATCCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCg                             >  1:1062063/1‑140 (MQ=255)
                                                                                                       tgcgccgCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGAt                                           <  1:489829/123‑1 (MQ=255)
                                                                                                       tgcgccgCTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGAt                                           >  2:489829/1‑123 (MQ=255)
                                                                                                         cgccgcTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCt                        >  1:167520/1‑140 (MQ=255)
                                                                                                          gccgcTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCTa                       <  2:1302896/140‑1 (MQ=255)
                                                                                                          gccgcTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCTa                       <  1:1197264/140‑1 (MQ=255)
                                                                                                              cTGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCTAACGt                   <  1:646405/140‑1 (MQ=255)
                                                                                                               tGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGgcagca                                    >  1:1280581/1‑122 (MQ=255)
                                                                                                               tGGCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGgcagca                                    <  2:1280581/122‑1 (MQ=255)
                                                                                                                 gCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCTAACGTCGa                <  1:1364644/140‑1 (MQ=255)
                                                                                                                 gCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCTAACGTCGa                <  1:431283/140‑1 (MQ=255)
                                                                                                                 gCAATGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCTAACGTCGa                <  2:1351811/140‑1 (MQ=255)
                                                                                                                    aTGCGCCTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCTAACGTCGAAAt             <  1:139157/140‑1 (MQ=255)
                                                                                                                         ccTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCTAACGTCGAAATCTGGa        <  1:415920/140‑1 (MQ=255)
                                                                                                                         ccTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCTAACGTCGAAATCTGGa        <  1:254276/140‑1 (MQ=255)
                                                                                                                         ccTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCTAACGTCGAAATCTGGa        <  2:446861/140‑1 (MQ=255)
                                                                                                                         ccTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCTAACGTCGAAATCTGGa        <  2:346303/140‑1 (MQ=255)
                                                                                                                         ccTGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCTAACGTCGAAATCTGGa        <  1:938084/140‑1 (MQ=255)
                                                                                                                           tGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCTAACGTCGAAATCTGGATg      <  2:528005/140‑1 (MQ=255)
                                                                                                                           tGCGTGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCTAACGTCGAAATCTGGATg      <  2:1475437/140‑1 (MQ=255)
                                                                                                                               tGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCTAACGTCGAAATCTGGATGCTGt  >  2:537215/1‑140 (MQ=255)
                                                                                                                               tGCAAACAGCGCCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCTAACGTCGAAATCTGGATGCTGt  <  2:675152/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                 
TGCCATTCGCTTCTTATCTGATTGCCGAACATATTGGCGTTTCCGGCATCCTCGCTGCGGTTGCCGCCGGGATGACCATCACCCGCTCCGGTGTGATGCGCCGTGCGCCGCTGGCAATGCGCCTGCGTGCAAACAGCACCTGGGCGATGCTGGAATTTGTCTTTAACGGCATGGTGTTCCTGCTGTTAGGTCTGCAGCTGCCGGGTATTCTGGAGACGTCGCTGATGGCAGCAGAAATCGACCCTAACGTCGAAATCTGGATGCTGT  >  NC_000913/4280662‑4280928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A