Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 112 94.0 3211786 99.3% 3189303 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,561,864 (C)6→7 coding (812/1179 nt) yjiJ ← putative transporter YjiJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,561,8581.C98.9% 336.7 / ‑3.5 94coding (818/1179 nt)yjiJputative transporter YjiJ
Reads supporting (aligned to +/- strand):  ref base . (1/0);  new base C (48/45);  total (49/45)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CAGAGATGTCGTGCCCATAAAGGTACCGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAG‑‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACG  >  NC_000913/4561725‑4561992
                                                                                                                                      |                                                                                                                                        
cAGAGATGTCGTGCCCATAAAGGTACCGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAG‑‑cccccc                                                                                                                                   >  1:895583/1‑140 (MQ=255)
   agaTGTCGTGCCCATAAAGGTACCGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAG‑‑cccccccaa                                                                                                                                >  1:610135/1‑137 (MQ=255)
   agaTGTCGTGCCCATAAAGGTACCGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAG‑‑cccccccaa                                                                                                                                >  2:1129784/1‑137 (MQ=255)
         ggTGCCCATAAAGGTACCGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGtttt                                                                                                                          <  2:1135570/139‑1 (MQ=255)
          gTGCCCATAAAGGTACCGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTtg                                                                                                                         <  1:1153666/140‑1 (MQ=255)
          gTGCCCATAAAGGTACCGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTtg                                                                                                                         >  1:993530/1‑140 (MQ=255)
          gTGCCCATAAAGGTACCGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTtg                                                                                                                         <  1:291138/140‑1 (MQ=255)
          gTGCCCATAAAGGTACCGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTtg                                                                                                                         <  2:592736/140‑1 (MQ=255)
          gTGCCCATAAAGGTACCGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTtg                                                                                                                         <  2:187458/140‑1 (MQ=255)
               cATAAAGGTACCGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGcc                                                                                                                    <  1:733795/140‑1 (MQ=255)
                  aaaGGTACCGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCAt                                                                                                                 >  2:1208090/1‑140 (MQ=255)
                        aCCGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATagccag                                                                                                           >  2:393117/1‑140 (MQ=255)
                        aCCGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATagccag                                                                                                           >  1:61149/1‑140 (MQ=255)
                        aCCGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATagccag                                                                                                           >  2:393327/1‑140 (MQ=255)
                         ccGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATagccagc                                                                                                          >  1:979632/1‑140 (MQ=255)
                         ccGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATagccagc                                                                                                          >  1:129757/1‑140 (MQ=255)
                         ccGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATagccagc                                                                                                          >  1:1224064/1‑140 (MQ=255)
                          cGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATagccagcc                                                                                                         >  1:847933/1‑140 (MQ=255)
                          cGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATagccagcc                                                                                                         >  1:128305/1‑140 (MQ=255)
                          cGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATagccagcc                                                                                                         >  2:937723/1‑140 (MQ=255)
                            ccAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACTCAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCaa                                                                                                       >  2:211785/1‑140 (MQ=255)
                            ccAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCaa                                                                                                       >  2:133809/1‑140 (MQ=255)
                               aaaCCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATagccag                                                                                                           <  2:741739/133‑1 (MQ=255)
                               aaaCCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATagccag                                                                                                           >  1:741739/1‑133 (MQ=255)
                                aaCCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCa                                                                                                   >  2:256659/1‑140 (MQ=255)
                                      gACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCATACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAgg                                                                                             <  1:829079/140‑1 (MQ=255)
                                      gACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAgg                                                                                             <  1:1071828/140‑1 (MQ=255)
                                      gACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAgg                                                                                             <  2:915293/140‑1 (MQ=255)
                                      gACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAgg                                                                                             <  2:1050390/140‑1 (MQ=255)
                                      gACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAgg                                                                                             >  2:355806/1‑140 (MQ=255)
                                      gACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAgg                                                                                             <  1:1361310/140‑1 (MQ=255)
                                      gACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAgg                                                                                             <  2:129757/140‑1 (MQ=255)
                                        ctgctgATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGTTGCCCATAGCCAGCCAAAGCAACCAGGca                                                                                           <  1:845135/140‑1 (MQ=255)
                                        ctgctgATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGca                                                                                           <  1:133809/140‑1 (MQ=255)
                                        ctgctgATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGAAAGCAGCACACAACTAGCCTGCAAAAGCAAATTCGCCGTCAGCCAGGGCAAAGC‑CCCCCC‑AACGTTATGCTGCCCATAGCCAGCCAAAGCAACCAGGca                                                                                           <  2:1600369/140‑1 (MQ=255)
                                          gctgATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGcaca                                                                                         <  1:1551033/140‑1 (MQ=255)
                                           ctgATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGcaca                                                                                         >  2:1228288/1‑140 (MQ=255)
                                           ctgATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACaa                                                                                        >  2:840081/1‑140 (MQ=255)
                                                gatAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGAt                                                                                   <  1:496304/140‑1 (MQ=255)
                                                 atAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATa                                                                                  >  2:423777/1‑140 (MQ=255)
                                                 atAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATa                                                                                  >  1:506613/1‑140 (MQ=255)
                                                     gCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAgtc                                                                              >  1:1438274/1‑138 (MQ=255)
                                                     gCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGcc                                                                              <  2:847933/140‑1 (MQ=255)
                                                     gCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGcc                                                                              >  2:1553599/1‑140 (MQ=255)
                                                     gCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGcc                                                                              <  2:128305/140‑1 (MQ=255)
                                                     gCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGcc                                                                              >  1:659408/1‑140 (MQ=255)
                                                          agagGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGTCGACTa                                                                         <  2:1438274/140‑1 (MQ=255)
                                                          agagGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTa                                                                         >  2:398476/1‑140 (MQ=255)
                                                          agagGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTa                                                                         <  2:952993/140‑1 (MQ=255)
                                                          agagGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTa                                                                         <  1:423777/140‑1 (MQ=255)
                                                          agagGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTa                                                                         <  1:398476/140‑1 (MQ=255)
                                                          agagGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTa                                                                         <  1:1336082/140‑1 (MQ=255)
                                                          agagGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTa                                                                         <  1:355806/140‑1 (MQ=255)
                                                          agagGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTa                                                                         <  2:672085/140‑1 (MQ=255)
                                                          agagGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTa                                                                         <  2:610135/140‑1 (MQ=255)
                                                             ggCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAG‑‑CCCCCCGAACGTTTTGGTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACg                                                                      >  2:1435723/1‑140 (MQ=255)
                                                              gCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGt                                                                     >  2:967491/1‑140 (MQ=255)
                                                              gCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGt                                                                     >  1:766408/1‑140 (MQ=255)
                                                                 aGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCa                                                                  >  1:254879/1‑140 (MQ=255)
                                                                 aGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCa                                                                  >  1:1456564/1‑140 (MQ=255)
                                                                   tCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCaga                                                                >  2:492709/1‑140 (MQ=255)
                                                                   tCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCaga                                                                >  2:346774/1‑140 (MQ=255)
                                                                      cTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGAt                                                             <  1:346774/140‑1 (MQ=255)
                                                                        ggCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATgg                                                           >  1:142589/1‑140 (MQ=255)
                                                                         gCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATggg                                                          <  2:1456564/140‑1 (MQ=255)
                                                                           gagaGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCg                                                        <  2:659408/140‑1 (MQ=255)
                                                                           gagaGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCg                                                        <  2:142589/140‑1 (MQ=255)
                                                                             gagTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGt                                                      <  2:61149/140‑1 (MQ=255)
                                                                             gagTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGt                                                      <  2:993530/140‑1 (MQ=255)
                                                                                tAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATggg                                                          >  2:1426193/1‑133 (MQ=255)
                                                                                tAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATggg                                                          <  1:1426193/133‑1 (MQ=255)
                                                                                  agcagcACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAAc                                                  <  1:1228288/140‑1 (MQ=255)
                                                                                   gcagcaCACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACaa                                                >  2:269126/1‑140 (MQ=255)
                                                                                       cacacaGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGt                                            <  1:937723/140‑1 (MQ=255)
                                                                                       cacacaGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGt                                            >  1:498401/1‑140 (MQ=255)
                                                                                       cacacaGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGt                                            <  1:1194584/140‑1 (MQ=255)
                                                                                         cacaGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGa                                          >  2:1206371/1‑140 (MQ=255)
                                                                                            aGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGcc                                       >  2:49181/1‑140 (MQ=255)
                                                                                              aTAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTg                                     <  2:766408/140‑1 (MQ=255)
                                                                                               tAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGc                                    <  1:211785/140‑1 (MQ=255)
                                                                                                 gCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCAt                                  >  1:1294445/1‑140 (MQ=255)
                                                                                                    tGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCtt                               >  1:250018/1‑140 (MQ=255)
                                                                                                      cACCGGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTc                             >  1:1270723/1‑140 (MQ=255)
                                                                                                      cACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATgg                                             >  2:1052525/1‑124 (MQ=255)
                                                                                                      cACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATgg                                             <  1:1052525/124‑1 (MQ=255)
                                                                                                      cACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTc                             >  2:52427/1‑140 (MQ=255)
                                                                                                      cACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTc                             >  1:1402627/1‑140 (MQ=255)
                                                                                                      cACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTc                             >  1:1519149/1‑140 (MQ=255)
                                                                                                      cACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTc                             >  1:576152/1‑140 (MQ=255)
                                                                                                      cACCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTc                             >  2:1027406/1‑140 (MQ=255)
                                                                                                       aCCAGCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTCg                            <  1:1208090/140‑1 (MQ=255)
                                                                                                           gCAAATTCGCCGTCAGGCAGGGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTCGCCAt                        >  2:209569/1‑140 (MQ=255)
                                                                                                                           gcaggGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCgg                  <  2:102397/130‑1 (MQ=255)
                                                                                                                           gcaggGCAAAGC‑CCCCCC‑AACGCTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCgg                  >  1:102397/1‑130 (MQ=255)
                                                                                                                            caggGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTcg       <  1:393117/140‑1 (MQ=255)
                                                                                                                            caggGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTcg       <  1:393327/140‑1 (MQ=255)
                                                                                                                             aggGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTcgc      <  1:269126/140‑1 (MQ=255)
                                                                                                                             aggGCAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTcgc      <  2:1519149/140‑1 (MQ=255)
                                                                                                                                 cAAAGC‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGcgacg  >  2:1130921/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                        
CAGAGATGTCGTGCCCATAAAGGTACCGCCAAAACCAAGACTGCTGATGATAAGCAAGAGAGGCGAGTCGCTGGCGAGAGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAG‑‑CCCCCC‑AACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACG  >  NC_000913/4561725‑4561992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A